BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276392.2.1
(644 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Aven... 232 3e-061
gb|CN815407.1|CN815407 HRO4509_C10_E19ZS5 Lib AA071E1X Aven... 228 5e-060
gb|CN816832.1|CN816832 HRO4525_C10_E19ZS5 Lib AA071E1X Aven... 184 6e-047
gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Aven... 121 8e-028
gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Aven... 121 8e-028
gb|CN821505.1|CN821505 HRO4426_B01_C02ZS5 Lib AA069E1X Aven... 111 8e-025
gb|CN820073.1|CN820073 HRO4410_G08_M16ZS5 Lib AA069E1X Aven... 88 1e-017
gb|CN814739.1|CN814739 HRO4502_A01_A02ZS5 Lib AA071E1X Aven... 82 7e-016
gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Aven... 60 3e-009
>gb|CN817735.1|CN817735 HRO4461_E02_J03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4461_E02_J03, mRNA sequence
Length = 683
Score = 232 bits (117), Expect = 3e-061
Identities = 285/341 (83%)
Strand = Plus / Plus
Query: 59 aagatggtgcagcggctcacctaccggaagcggcacagctacgccaccaaatcgaaccag 118
|||||||||||||| || || ||||||||||| ||||||||||| || || ||||| |||
Sbjct: 44 aagatggtgcagcgtctgacttaccggaagcgtcacagctacgcgacaaagtcgaatcag 103
Query: 119 acccgcgtcgtcaagacacctggtgggaaacttgtgtaccagtacaccaagaagcgcgcg 178
||||| ||||||||||| || ||||| || ||||| ||||||||||| |||||| | ||
Sbjct: 104 acccgggtcgtcaagaccccaggtggaaagcttgtttaccagtacacaaagaagagggct 163
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
||||| || |||||||| || || |||||||||||||| |||||||| |||||||| |||
Sbjct: 164 agcggtcccaagtgccccgttactgggaagaagatccagggaattcctcacctgaggcct 223
Query: 239 gctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggc 298
|||||||||||||||| |||||| | ||||||| ||||||||||| ||||| |||||
Sbjct: 224 actgagtacaagaggtcaaggttgtctaggaaccgcaggactgtgaaccgtccttatggt 283
Query: 299 ggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaa 358
|| || || ||||| |||| |||||||||||||| || || || || ||||| || ||
Sbjct: 284 ggagtgctttctggacctgctgttagggagaggattattcgtgctttcttggtcgaagag 343
Query: 359 cagaagatagtgaagaaggtgttgaagatccaaaagaccaa 399
|||||||| || |||||||| |||| ||||| || |||||
Sbjct: 344 cagaagattgttaagaaggtcctgaaaatccagaaaaccaa 384
>gb|CN815407.1|CN815407 HRO4509_C10_E19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_C10_E19, mRNA sequence
Length = 573
Score = 228 bits (115), Expect = 5e-060
Identities = 271/323 (83%)
Strand = Plus / Plus
Query: 80 taccggaagcggcacagctacgccaccaaatcgaaccagacccgcgtcgtcaagacacct 139
||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| ||
Sbjct: 6 taccggaagcggcacagctacgccaccaagtccaaccagaccagggtcgtcaagacccca 65
Query: 140 ggtgggaaacttgtgtaccagtacaccaagaagcgcgcgagcggaccgaagtgcccagtc 199
|| ||||| || |||||||||||||| |||||| | |||||||| ||||| ||||| |||
Sbjct: 66 ggagggaagctcgtgtaccagtacacgaagaagagggcgagcgggccgaaatgcccggtc 125
Query: 200 accgggaagaagatccaaggaattccacacctgagacctgctgagtacaagaggtccagg 259
||||| ||||||||||| || ||||| |||||||| ||| |||||||||| ||||||||
Sbjct: 126 accggcaagaagatccaggggattcctcacctgaggcctactgagtacaaaaggtccaga 185
Query: 260 ttggcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctgtctggtactgca 319
|| | |||||| || || ||||| ||||| ||||| |||||||| ||||| | ||
Sbjct: 186 ttatccaggaacaggagaaccgtgaaccgtccttatggtggtgttctatctggcccggct 245
Query: 320 gttagggagaggatcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtg 379
|||||||||||||||||||| || || | || || || || ||||| |||||||||||
Sbjct: 246 gttagggagaggatcatccgagcattccttgtggaagagcaaaagatcgtgaagaaggtt 305
Query: 380 ttgaagatccaaaagaccaagga 402
|||||||||| |||||||||||
Sbjct: 306 ctgaagatccagaagaccaagga 328
>gb|CN816832.1|CN816832 HRO4525_C10_E19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_C10_E19, mRNA sequence
Length = 544
Score = 184 bits (93), Expect = 6e-047
Identities = 264/321 (82%)
Strand = Plus / Plus
Query: 82 ccggaagcggcacagctacgccaccaaatcgaaccagacccgcgtcgtcaagacacctgg 141
||||||| |||||||||| |||||||| || |||||||| || ||||||||||| || ||
Sbjct: 16 ccggaagaggcacagctatgccaccaagtccaaccagacgcgggtcgtcaagaccccagg 75
Query: 142 tgggaaacttgtgtaccagtacaccaagaagcgcgcgagcggaccgaagtgcccagtcac 201
||| || || ||||||||||||||||||||| | || ||||| || || ||||| || ||
Sbjct: 76 tggtaagctcgtgtaccagtacaccaagaagagggctagcggccccaaatgccctgtgac 135
Query: 202 cgggaagaagatccaaggaattccacacctgagacctgctgagtacaagaggtccaggtt 261
||||||||||||||| || ||||| |||||||| ||| | |||||||| || || |||||
Sbjct: 136 cgggaagaagatccaggggattccccacctgaggcctaccgagtacaaaagatcaaggtt 195
Query: 262 ggcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctgtctggtactgcagt 321
| | ||||||| |||||||| || ||||| ||||| || || || ||||| |||||||
Sbjct: 196 gtctaggaaccgcaggactgtcaaccgtccctatggtggagtgctctctggacctgcagt 255
Query: 322 tagggagaggatcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtgtt 381
||| || |||||||| || || || |||| ||||| |||||||| |||||||| || ||
Sbjct: 256 tagagaaaggatcattcgtgctttcctggtcgaggagcagaagattgtgaagaaagtctt 315
Query: 382 gaagatccaaaagaccaagga 402
||| || || || ||||||||
Sbjct: 316 gaaaatacagaaaaccaagga 336
>gb|CN815372.1|CN815372 HRO4508_H11_P22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H11_P22, mRNA sequence
Length = 720
Score = 121 bits (61), Expect = 8e-028
Identities = 163/197 (82%)
Strand = Plus / Plus
Query: 203 gggaagaagatccaaggaattccacacctgagacctgctgagtacaagaggtccaggttg 262
|||||||||||||| |||||||| |||||||| ||| |||||||||||||||| ||||||
Sbjct: 238 gggaagaagatccagggaattcctcacctgaggcctactgagtacaagaggtcaaggttg 297
Query: 263 gcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctgtctggtactgcagtt 322
| ||||||| ||||| ||||| ||||| || || || || || ||||| |||| |||
Sbjct: 298 tctaggaaccgcaggaccgtgaaccgtccttacggtggagtgctttctggacctgctgtt 357
Query: 323 agggagaggatcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtgttg 382
|||||||||||||| || || || ||||| || || |||||||| || |||||||| ||
Sbjct: 358 agggagaggatcattcgtgctttcttggtcgaagagcagaagattgtcaagaaggtcctg 417
Query: 383 aagatccaaaagaccaa 399
|| ||||| || |||||
Sbjct: 418 aaaatccagaaaaccaa 434
>gb|CN820354.1|CN820354 HRO4418_D08_G16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_D08_G16, mRNA
sequence
Length = 546
Score = 121 bits (61), Expect = 8e-028
Identities = 163/197 (82%)
Strand = Plus / Plus
Query: 203 gggaagaagatccaaggaattccacacctgagacctgctgagtacaagaggtccaggttg 262
|||||||||||||| |||||||| |||||||| ||| |||||||||||||||| ||||||
Sbjct: 31 gggaagaagatccagggaattcctcacctgaggcctactgagtacaagaggtcaaggttg 90
Query: 263 gcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctgtctggtactgcagtt 322
| ||||||| ||||| ||||| ||||| || || || || || ||||| |||| |||
Sbjct: 91 tctaggaaccgcaggaccgtgaaccgtccttacggtggagtgctttctggacctgctgtt 150
Query: 323 agggagaggatcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtgttg 382
|||||||||||||| || || || ||||| || || |||||||| || |||||||| ||
Sbjct: 151 agggagaggatcattcgtgctttcttggtcgaagagcagaagattgtcaagaaggtcctg 210
Query: 383 aagatccaaaagaccaa 399
|| ||||| || |||||
Sbjct: 211 aaaatccagaaaaccaa 227
>gb|CN821505.1|CN821505 HRO4426_B01_C02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_B01_C02, mRNA
sequence
Length = 459
Score = 111 bits (56), Expect = 8e-025
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
||||| || |||||||| || ||||||||||||||||| || ||||| ||||| || |||
Sbjct: 20 agcggccccaagtgccctgtgaccgggaagaagatccaggggattccccacctcaggcct 79
Query: 239 gctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggc 298
| |||||||| || || |||||| | ||||||| |||||||| || |||||||||||
Sbjct: 80 accgagtacaaaagatcaaggttgtctaggaaccgcaggactgtcaaccgtccatatggt 139
Query: 299 ggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttggttgaggaa 358
|| || || ||||| |||||||||| || |||||||| || || || |||| |||||
Sbjct: 140 ggagtgctctctggacctgcagttagagaaaggatcattcgtgctttcctggtcgaggag 199
Query: 359 cagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
|||||||| |||||||| || ||||| || || || ||||||||
Sbjct: 200 cagaagattgtgaagaaagtcttgaaaatacagaaaaccaagga 243
>gb|CN820073.1|CN820073 HRO4410_G08_M16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G08_M16, mRNA
sequence
Length = 384
Score = 87.7 bits (44), Expect = 1e-017
Identities = 140/172 (81%)
Strand = Plus / Plus
Query: 231 tgagacctgctgagtacaagaggtccaggttggcaaggaaccaaaggactgtgaatcgtc 290
|||| ||| |||||||||| || || |||||| | ||||||| ||||||||||| ||||
Sbjct: 1 tgaggcctactgagtacaaaagatcaaggttgtctaggaaccgcaggactgtgaaccgtc 60
Query: 291 catatggcggtgttctgtctggtactgcagttagggagaggatcatccgcgcctttttgg 350
| ||||| || || || ||||| |||||||||| || ||||||||||| || || |||
Sbjct: 61 cctatggtggagtgctctctggacctgcagttagagaaaggatcatccgtgctttcctgg 120
Query: 351 ttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
| ||||| |||||||| |||||||| || ||||| || || || ||||||||
Sbjct: 121 tcgaggagcagaagattgtgaagaaagtcttgaaaatacagaaaaccaagga 172
>gb|CN814739.1|CN814739 HRO4502_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A01_A02, mRNA sequence
Length = 444
Score = 81.8 bits (41), Expect = 7e-016
Identities = 171/213 (80%), Gaps = 1/213 (0%)
Strand = Plus / Plus
Query: 190 gtgcccagtcaccgggaagaagatccaaggaattccacacctgagacctgctgagtacaa 249
|||||| || || |||||||||| ||| || ||||| ||||| || ||| | ||||||||
Sbjct: 5 gtgccctgtgactgggaagaaga-ccaggggattccccacctcaggcctaccgagtacaa 63
Query: 250 gaggtccaggttggcaaggaaccaaaggactgtgaatcgtccatatggcggtgttctgtc 309
|| || |||||| | ||||||| |||||||| || ||||||||||| || || || ||
Sbjct: 64 aagatcaaggttgtctaggaaccgcaggactgtcaaccgtccatatggtggagtgctctc 123
Query: 310 tggtactgcagttagggagaggatcatccgcgcctttttggttgaggaacagaagatagt 369
||| |||||||||| || |||||||| || || || |||| ||||| |||||||| ||
Sbjct: 124 tggacctgcagttagagaaaggatcattcgtgctttcctggtcgaggagcagaagattgt 183
Query: 370 gaagaaggtgttgaagatccaaaagaccaagga 402
|||||| || ||||| || || || ||||||||
Sbjct: 184 gaagaaagtcttgaaaatacagaaaaccaagga 216
>gb|CN821061.1|CN821061 HRO4427_B01_D01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B01_D01, mRNA
sequence
Length = 408
Score = 60.0 bits (30), Expect = 3e-009
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 325 ggagaggatcatccgcgcctttttggttgaggaacagaagatagtgaagaaggtgttgaa 384
||||||||||||| |||| || | || || || |||||||| ||||||||||| ||||
Sbjct: 9 ggagaggatcatctgcgcattccttgtcgaagagcagaagatcgtgaagaaggttctgaa 68
Query: 385 gatccaaaagaccaagga 402
|||||| |||||||||||
Sbjct: 69 gatccagaagaccaagga 86
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1538
Number of Sequences: 8143
Number of extensions: 1538
Number of successful extensions: 391
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 9
length of query: 644
length of database: 4,702,463
effective HSP length: 16
effective length of query: 628
effective length of database: 4,572,175
effective search space: 2871325900
effective search space used: 2871325900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)