BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161295.2.1
(1475 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817301.1|CN817301 HRO4464_H06_O12ZS5 Lib AA070E1X Aven... 32 1.3
gb|CN820235.1|CN820235 HRO4417_A09_A17ZS5 Lib AA069E1X Aven... 32 1.3
gb|CN820807.1|CN820807 HRO4420_B02_D04ZS5 Lib AA069E1X Aven... 32 1.3
gb|AF378025.1|AF378025 Avena sativa isolate Oat6-7 retrovir... 32 1.3
gb|CN814714.1|CN814714 HRO4501_F12_K23ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN814929.1|CN814929 HRO4504_A07_B14ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN815162.1|CN815162 HRO4506_E10_I20ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN815333.1|CN815333 HRO4508_E06_J12ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN815394.1|CN815394 HRO4509_B09_C17ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN815613.1|CN815613 HRO4513_F03_K05ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN815777.1|CN815777 HRO4510_D05_G10ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN816206.1|CN816206 HRO4518_B05_C10ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN816246.1|CN816246 HRO4518_E11_I22ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN816771.1|CN816771 HRO4524_F01_L02ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN817049.1|CN817049 HRO4527_F09_L17ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN817148.1|CN817148 HRO4528_G06_N12ZS5 Lib AA071E1X Aven... 30 5.3
gb|CN817924.1|CN817924 HRO4462_A09_B18ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN818092.1|CN818092 HRO4456_E12_I24ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN818100.1|CN818100 HRO4471_H07_O13ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN818275.1|CN818275 HRO4470_C10_F20ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN818322.1|CN818322 HRO4470_A02_B04ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN818631.1|CN818631 HRO4467_D05_G09ZS5 Lib AA070E1X Aven... 30 5.3
gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820192.1|CN820192 HRO4412_C05_F10ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820258.1|CN820258 HRO4417_C12_E23ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820334.1|CN820334 HRO4418_B11_C22ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820341.1|CN820341 HRO4418_C06_E12ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820425.1|CN820425 HRO4419_C01_F01ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820458.1|CN820458 HRO4419_F03_L05ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820609.1|CN820609 HRO4415_D07_H13ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN820964.1|CN820964 HRO4422_A02_A04ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN821189.1|CN821189 HRO4428_E04_J08ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN821248.1|CN821248 HRO4423_B09_D17ZS5 Lib AA069E1X Aven... 30 5.3
gb|CN821548.1|CN821548 HRO4426_E10_I20ZS5 Lib AA069E1X Aven... 30 5.3
>gb|CN817301.1|CN817301 HRO4464_H06_O12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_H06_O12, mRNA sequence
Length = 804
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 624 tcatcagaccctcaac 639
||||||||||||||||
Sbjct: 95 tcatcagaccctcaac 80
>gb|CN820235.1|CN820235 HRO4417_A09_A17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_A09_A17, mRNA
sequence
Length = 644
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 953 ctggtgaggaggaacc 968
||||||||||||||||
Sbjct: 535 ctggtgaggaggaacc 550
>gb|CN820807.1|CN820807 HRO4420_B02_D04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_B02_D04, mRNA
sequence
Length = 334
Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 553 aagctcaagcatggtg 568
||||||||||||||||
Sbjct: 29 aagctcaagcatggtg 14
>gb|AF378025.1|AF378025 Avena sativa isolate Oat6-7 retrovirus-like element reverse
transcriptase gene, partial cds
Length = 762
Score = 32.2 bits (16), Expect = 1.3
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1019 ttggtcttgtgctatcacaa 1038
||||||||||||| ||||||
Sbjct: 327 ttggtcttgtgctttcacaa 308
>gb|CN814714.1|CN814714 HRO4501_F12_K23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_F12_K23, mRNA sequence
Length = 855
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 aaaatgacaggattt 35
|||||||||||||||
Sbjct: 585 aaaatgacaggattt 599
>gb|CN814929.1|CN814929 HRO4504_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_A07_B14, mRNA sequence
Length = 481
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 108 cttggcaagctcaag 122
>gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_C09_E18, mRNA sequence
Length = 476
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 457 gctgatgtcgggctt 471
|||||||||||||||
Sbjct: 140 gctgatgtcgggctt 126
Score = 30.2 bits (15), Expect = 5.3
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 560 agcatggtgaactcgccagggtt 582
|||||||||||||| || |||||
Sbjct: 37 agcatggtgaactcacctgggtt 15
>gb|CN815162.1|CN815162 HRO4506_E10_I20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_E10_I20, mRNA sequence
Length = 527
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 125 cttggcaagctcaag 139
>gb|CN815333.1|CN815333 HRO4508_E06_J12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_E06_J12, mRNA sequence
Length = 476
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 175 cttggcaagctcaag 189
>gb|CN815394.1|CN815394 HRO4509_B09_C17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_B09_C17, mRNA sequence
Length = 456
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 147 cttggcaagctcaag 161
>gb|CN815613.1|CN815613 HRO4513_F03_K05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_F03_K05, mRNA sequence
Length = 635
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 297 cttggcaagctcaag 311
>gb|CN815777.1|CN815777 HRO4510_D05_G10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_D05_G10, mRNA sequence
Length = 579
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 222 cttggcaagctcaag 236
>gb|CN816206.1|CN816206 HRO4518_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_B05_C10, mRNA sequence
Length = 592
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 208 cttggcaagctcaag 222
>gb|CN816246.1|CN816246 HRO4518_E11_I22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_E11_I22, mRNA sequence
Length = 869
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1349 ggatcatgaagcaaa 1363
|||||||||||||||
Sbjct: 362 ggatcatgaagcaaa 348
>gb|CN816771.1|CN816771 HRO4524_F01_L02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_F01_L02, mRNA sequence
Length = 494
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 110 cttggcaagctcaag 124
>gb|CN817049.1|CN817049 HRO4527_F09_L17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_F09_L17, mRNA sequence
Length = 768
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 340 cttggcaagctcaag 326
>gb|CN817148.1|CN817148 HRO4528_G06_N12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_G06_N12, mRNA sequence
Length = 676
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 32 cttggcaagctcaag 46
>gb|CN817924.1|CN817924 HRO4462_A09_B18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_A09_B18, mRNA sequence
Length = 799
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 583 acccaggttgaatgg 597
|||||||||||||||
Sbjct: 360 acccaggttgaatgg 374
>gb|CN818092.1|CN818092 HRO4456_E12_I24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_E12_I24, mRNA sequence
Length = 488
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1235 gtcaacttttgtgtt 1249
|||||||||||||||
Sbjct: 465 gtcaacttttgtgtt 479
>gb|CN818100.1|CN818100 HRO4471_H07_O13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_H07_O13, mRNA sequence
Length = 376
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 442 gaactccttggcgcg 456
|||||||||||||||
Sbjct: 48 gaactccttggcgcg 34
>gb|CN818275.1|CN818275 HRO4470_C10_F20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C10_F20, mRNA sequence
Length = 387
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 442 gaactccttggcgcg 456
|||||||||||||||
Sbjct: 59 gaactccttggcgcg 45
>gb|CN818322.1|CN818322 HRO4470_A02_B04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_A02_B04, mRNA sequence
Length = 468
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 130 cttggcaagctcaag 144
>gb|CN818631.1|CN818631 HRO4467_D05_G09ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_D05_G09, mRNA sequence
Length = 464
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 442 gaactccttggcgcg 456
|||||||||||||||
Sbjct: 116 gaactccttggcgcg 102
>gb|CN819880.1|CN819880 HRO4407_C04_F07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C04_F07, mRNA
sequence
Length = 741
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 511 gatccgtgcgttggg 525
|||||||||||||||
Sbjct: 580 gatccgtgcgttggg 566
>gb|CN820192.1|CN820192 HRO4412_C05_F10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_C05_F10, mRNA
sequence
Length = 533
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 159 cttggcaagctcaag 173
>gb|CN820258.1|CN820258 HRO4417_C12_E23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_C12_E23, mRNA
sequence
Length = 563
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 346 cttggcaagctcaag 332
>gb|CN820334.1|CN820334 HRO4418_B11_C22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B11_C22, mRNA
sequence
Length = 556
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 224 cttggcaagctcaag 238
>gb|CN820341.1|CN820341 HRO4418_C06_E12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_C06_E12, mRNA
sequence
Length = 619
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 268 cttggcaagctcaag 282
>gb|CN820425.1|CN820425 HRO4419_C01_F01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_C01_F01, mRNA
sequence
Length = 500
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 940 gacctcactggtact 954
|||||||||||||||
Sbjct: 209 gacctcactggtact 195
>gb|CN820458.1|CN820458 HRO4419_F03_L05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_F03_L05, mRNA
sequence
Length = 541
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 167 cttggcaagctcaag 181
>gb|CN820609.1|CN820609 HRO4415_D07_H13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_D07_H13, mRNA
sequence
Length = 515
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 437 ccgaggaactccttg 451
|||||||||||||||
Sbjct: 4 ccgaggaactccttg 18
>gb|CN820964.1|CN820964 HRO4422_A02_A04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_A02_A04, mRNA
sequence
Length = 800
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1461 tcagaagcataaaaa 1475
|||||||||||||||
Sbjct: 501 tcagaagcataaaaa 487
>gb|CN821189.1|CN821189 HRO4428_E04_J08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E04_J08, mRNA
sequence
Length = 694
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 547 cttggcaagctcaag 561
|||||||||||||||
Sbjct: 370 cttggcaagctcaag 384
>gb|CN821248.1|CN821248 HRO4423_B09_D17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_B09_D17, mRNA
sequence
Length = 846
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1349 ggatcatgaagcaaa 1363
|||||||||||||||
Sbjct: 479 ggatcatgaagcaaa 465
>gb|CN821548.1|CN821548 HRO4426_E10_I20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_E10_I20, mRNA
sequence
Length = 590
Score = 30.2 bits (15), Expect = 5.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 382 gaagtcggagaccat 396
|||||||||||||||
Sbjct: 151 gaagtcggagaccat 165
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4011
Number of Sequences: 8143
Number of extensions: 4011
Number of successful extensions: 1068
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1029
Number of HSP's gapped (non-prelim): 39
length of query: 1475
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1458
effective length of database: 4,564,032
effective search space: 6654358656
effective search space used: 6654358656
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)