BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818949.1|CN818949 HRO4474_G09_N18ZS5 Lib AA070E1X Aven... 161 1e-039
gb|CN815151.1|CN815151 HRO4506_D10_G20ZS5 Lib AA071E1X Aven... 155 7e-038
>gb|CN818949.1|CN818949 HRO4474_G09_N18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_G09_N18, mRNA sequence
Length = 495
Score = 161 bits (81), Expect = 1e-039
Identities = 234/285 (82%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
|||||||| ||||||| | || ||||||||| || ||||| | || ||||||||||| |
Sbjct: 295 atctccgcgacaagctgtgactgagccagcgcaaggtcgaacgaggagaaggagtgagca 236
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
| || |||||||||||||||||||| ||||||| |||||||||| |||| ||| |||||
Sbjct: 235 gggagtgtgacctgcatctgctccgcagcgttgcgcagctggcttgtcacaggcacaacc 176
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
|||||||||||||||||||| || || ||||| || |||| ||||| || || || |||
Sbjct: 175 ttgttcgggttactgaaggaattttcatccatcacattgctggacgtcagaacagtagcg 116
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
| || ||||||||||||| ||| ||| |||||| ||| | || |||||||| ||
Sbjct: 115 ttcgaacccagcgcgttgatgctagcctgaagcccggtcgcagtgattgtgaggctcacc 56
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattc 464
||||||| || |||||||| | ||||||||||||||||||||||
Sbjct: 55 tggtccgaaccaaagttcacaatcttcactctcaggaagctattc 11
>gb|CN815151.1|CN815151 HRO4506_D10_G20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_D10_G20, mRNA sequence
Length = 599
Score = 155 bits (78), Expect = 7e-038
Identities = 264/326 (80%)
Strand = Plus / Minus
Query: 180 atctccgccacaagcttgggctcagccagcgccagatcgaaggcggtgaaggagtgagga 239
|||||||| ||||||| | || ||||||||| || ||||| | || ||||||||||| |
Sbjct: 329 atctccgcgacaagctgtgactgagccagcgcaaggtcgaacgaggagaaggagtgagca 270
Query: 240 gccagcgtgacctgcatctgctccgcggcgttgctcagctggcttttcaccggcgcaacc 299
| || |||||||||||||||||||| ||||||| |||||||||| |||| ||| |||||
Sbjct: 269 gggagtgtgacctgcatctgctccgcagcgttgcgcagctggcttgtcacaggcacaacc 210
Query: 300 ttgttcgggttactgaaggagttctcgtccatgacgttgccagacgtgaggacggtggcg 359
||||| |||||||||||||| || || ||||| || |||| || ||||| || || |||
Sbjct: 209 ttgtttgggttactgaaggaattttcatccatcacattgctggatgtgagaacagtagcg 150
Query: 360 gttgatcccagcgcgttgacgctggccccgagcccgctcgtggagaccgtgaggctaacg 419
| || || || | ||||| ||| ||| |||||| ||| |||| |||||||| ||
Sbjct: 149 ttcgaccctagagtgttgatgctagcctgaagcccggtcgcagagattgtgaggctcacc 90
Query: 420 gggtccgacccgaagttcacgaccttcactctcaggaagctattctctgcatcctgccac 479
||||||| || |||||||| | |||||||||||||||||||||| | | |||||||||
Sbjct: 89 tggtccgaaccaaagttcacaatcttcactctcaggaagctattcccagaatcctgccag 30
Query: 480 gtgatcgcagacgcggccagcgaact 505
||||| ||||| || ||||| |||||
Sbjct: 29 gtgatagcagatgctgccagagaact 4
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1557
Number of Sequences: 8143
Number of extensions: 1557
Number of successful extensions: 479
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 3
length of query: 780
length of database: 4,702,463
effective HSP length: 16
effective length of query: 764
effective length of database: 4,572,175
effective search space: 3493141700
effective search space used: 3493141700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)