BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.3
(885 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Aven... 291 5e-079
gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Aven... 147 2e-035
gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old... 54 2e-007
gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA ... 46 5e-005
gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Aven... 46 5e-005
gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Aven... 42 8e-004
>gb|CN814756.1|CN814756 HRO4502_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B07_C14, mRNA sequence
Length = 620
Score = 291 bits (147), Expect = 5e-079
Identities = 264/303 (87%)
Strand = Plus / Plus
Query: 234 ttctccaggatcaccaagttcgaggaggagctccgcgcggtgctgccccaggaggtggag 293
||||||| |||||||||||||||||||||||| ||| ||| |||||||| |||| | |||
Sbjct: 31 ttctccaagatcaccaagttcgaggaggagctgcgctcggcgctgccccgggagatcgag 90
Query: 294 gccgcccgcgtcgccgtcgccgagggcaccgcccccgtggccaaccggatcgcggacagc 353
||||||||||||||| ||| |||||||| || | | |||| |||| ||| |||
Sbjct: 91 gccgcccgcgtcgccttcgagaccggcaccgcgccgatcccgaacctgatcaaggagagc 150
Query: 354 cgctcgttcccgctgtaccgcttcgtgcgccaggagctcggctgcgtgttcctcaccggc 413
| || |||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||
Sbjct: 151 aggtctttcccgctgtaccgcttcgtccgcgaggagctgggctgcgtgtacctcaccggc 210
Query: 414 gagaagctcaagtcccccggcgaggagtgcaacaaggtgttcctcggcatcagccagggc 473
||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 211 gagaaactcctgtcccccggcgaggagtgcaacaaggtgttcctgggcatcagccagggc 270
Query: 474 aagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgctgcccatc 533
|||||| ||||||||||||| |||||||||||||||||| ||||| |||| |||||||||
Sbjct: 271 aagctcatcgaccccatgctggagtgcctcaaggagtggaacggcgagcccctgcccatc 330
Query: 534 aac 536
|||
Sbjct: 331 aac 333
>gb|CN817035.1|CN817035 HRO4527_E07_J13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_E07_J13, mRNA sequence
Length = 418
Score = 147 bits (74), Expect = 2e-035
Identities = 95/102 (93%)
Strand = Plus / Plus
Query: 435 gaggagtgcaacaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctc 494
|||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 11 gaggagtgcaactaggtgttcctgggcatcagccagggcaagctcatcgaccccatgctg 70
Query: 495 gagtgcctcaaggagtgggacggcaagccgctgcccatcaac 536
|||||||||||||||||| ||||| |||| ||||||||||||
Sbjct: 71 gagtgcctcaaggagtggaacggcgagcccctgcccatcaac 112
>gb|AB128046.1|AB128046 AB128046 Avena sativa leaf 7-day-old Avena sativa cDNA clone VRG86,
mRNA sequence
Length = 936
Score = 54.0 bits (27), Expect = 2e-007
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 467 ccagggcaagctcgtcgaccccatgctcgagtgcctcaaggagtgggacggcaagccgct 526
||||||||||| | ||||| | |||| |||||||||||||||||| ||||| |||| ||
Sbjct: 345 ccagggcaagcacatcgacgcgctgcttgagtgcctcaaggagtggaacggcgagccact 286
Query: 527 gcc 529
|||
Sbjct: 285 gcc 283
>gb|BE439042.1|BE439042 CDO215_WHE2D0041F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO215_WHE2D0041, mRNA sequence
Length = 341
Score = 46.1 bits (23), Expect = 5e-005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 481 tcgaccccatgctcgagtgcctcaaggagtgggacggcaagcc 523
||||||| |||| |||||||||||||||||| ||||| ||||
Sbjct: 321 tcgacccgctgctggagtgcctcaaggagtggaacggcgagcc 279
>gb|CN821598.1|CN821598 HRO4408_B04_D08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_B04_D08, mRNA
sequence
Length = 371
Score = 46.1 bits (23), Expect = 5e-005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 495 gagtgcctcaaggagtgggacggcaagccgctgcc 529
|||||||||||||||||| ||||| |||| |||||
Sbjct: 10 gagtgcctcaaggagtggaacggcgagcccctgcc 44
>gb|CN815319.1|CN815319 HRO4508_D04_H08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_D04_H08, mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 8e-004
Identities = 60/73 (82%)
Strand = Plus / Plus
Query: 445 acaaggtgttcctcggcatcagccagggcaagctcgtcgaccccatgctcgagtgcctca 504
||||||||||| | | ||| | | ||||||||| | ||||| | |||| ||||||||||
Sbjct: 23 acaaggtgttcgttgccatgaacaagggcaagcacatcgacgctctgcttgagtgcctca 82
Query: 505 aggagtgggacgg 517
|||||||| ||||
Sbjct: 83 aggagtggaacgg 95
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2732
Number of Sequences: 8143
Number of extensions: 2732
Number of successful extensions: 997
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 9
length of query: 885
length of database: 4,702,463
effective HSP length: 16
effective length of query: 869
effective length of database: 4,572,175
effective search space: 3973220075
effective search space used: 3973220075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)