BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.1
(950 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN814680.1|CN814680 HRO4501_D01_G01ZS5 Lib AA071E1X Aven... 391 e-109
gb|CN820687.1|CN820687 HRO4416_D03_H06ZS5 Lib AA069E1X Aven... 307 1e-083
gb|BE439152.1|BE439152 CDO1199_WHE03C05F ITEC CDO Oat cDNA ... 34 0.22
gb|CN816219.1|CN816219 HRO4518_C06_E12ZS5 Lib AA071E1X Aven... 34 0.22
gb|CN816417.1|CN816417 HRO4520_E05_J10ZS5 Lib AA071E1X Aven... 34 0.22
gb|CN816774.1|CN816774 HRO4524_F04_L08ZS5 Lib AA071E1X Aven... 34 0.22
gb|CN817497.1|CN817497 HRO4454_G02_N04ZS5 Lib AA070E1X Aven... 34 0.22
gb|CN818121.1|CN818121 HRO4456_F06_K12ZS5 Lib AA070E1X Aven... 34 0.22
>gb|CN814680.1|CN814680 HRO4501_D01_G01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D01_G01, mRNA sequence
Length = 565
Score = 391 bits (197), Expect = e-109
Identities = 308/345 (89%)
Strand = Plus / Minus
Query: 327 gatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagctgg 386
|||| |||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 370 gatgacttctcttggtcattctcgagctggctgaaattccccttctccttgatgagctga 311
Query: 387 atgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctgatg 446
| || |||||| ||||| | ||||| |||||||| || ||||| || ||||||||||||
Sbjct: 310 gtatgatggtgcctgcagaagagcttgccctcgtgtgcgatgtaatttgaagggctgatg 251
Query: 447 gtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaacagtg 506
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct: 250 gtgcaccctccatggctgcacttgaagcagctcttgtggtacatagtgttattgacggta 191
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||||||| | || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 190 accctctcaatcgggtagactgtcttgctgcatccaaagcatttctctctggtgccagca 131
Query: 567 aaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgacaacc 626
|| | ||| ||||||||| |||||||||| ||| | | ||||||||| ||||||||||||
Sbjct: 130 aatgagctcgagactttaatagcattctcgttctcgaggtttctttcaggcttgacaacc 71
Query: 627 ttgggagttccttcgaagctcttgtccaagctccctgtcctcttg 671
|||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 70 ttgggagttccttcgaagatcttgtccaagctcccagtcctcttg 26
>gb|CN820687.1|CN820687 HRO4416_D03_H06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_D03_H06, mRNA
sequence
Length = 516
Score = 307 bits (155), Expect = 1e-083
Identities = 239/267 (89%)
Strand = Plus / Minus
Query: 327 gatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagctgg 386
|||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 267 gatgacttctcgtggtcgttctcgagctggctgaaattccccttctccttgatgagctga 208
Query: 387 atgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctgatg 446
| || |||||| ||||| | ||||| || ||||| || ||||| || ||||||||||||
Sbjct: 207 gtatgatggtgcctgcagaagagcttgccttcgtgtgcgatgtaatttgaagggctgatg 148
Query: 447 gtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaacagtg 506
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 147 gtgcaccctccatggctgcacttgaagcagctcttgtggtacatagtgttattgacagta 88
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 87 accctctcaattgggtagactgtcttgctgcatccaaaacatttctctctggtgccagca 28
Query: 567 aaggcgcttgagactttagtagcattc 593
|| | ||| ||||||||| ||||||||
Sbjct: 27 aatgagctcgagactttaatagcattc 1
>gb|BE439152.1|BE439152 CDO1199_WHE03C05F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1199_WHE03C05, mRNA sequence
Length = 273
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 143 cagatacaagacaacaa 159
|||||||||||||||||
Sbjct: 31 cagatacaagacaacaa 47
>gb|CN816219.1|CN816219 HRO4518_C06_E12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_C06_E12, mRNA sequence
Length = 446
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 143 cagatacaagacaacaa 159
|||||||||||||||||
Sbjct: 42 cagatacaagacaacaa 58
>gb|CN816417.1|CN816417 HRO4520_E05_J10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_E05_J10, mRNA sequence
Length = 445
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 143 cagatacaagacaacaa 159
|||||||||||||||||
Sbjct: 41 cagatacaagacaacaa 57
>gb|CN816774.1|CN816774 HRO4524_F04_L08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_F04_L08, mRNA sequence
Length = 453
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 143 cagatacaagacaacaa 159
|||||||||||||||||
Sbjct: 393 cagatacaagacaacaa 377
>gb|CN817497.1|CN817497 HRO4454_G02_N04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4454_G02_N04, mRNA sequence
Length = 489
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 406 acagcttcccctcgtgc 422
|||||||||||||||||
Sbjct: 21 acagcttcccctcgtgc 5
>gb|CN818121.1|CN818121 HRO4456_F06_K12ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_F06_K12, mRNA sequence
Length = 618
Score = 34.2 bits (17), Expect = 0.22
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 143 cagatacaagacaacaa 159
|||||||||||||||||
Sbjct: 561 cagatacaagacaacaa 545
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2942
Number of Sequences: 8143
Number of extensions: 2942
Number of successful extensions: 851
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 8
length of query: 950
length of database: 4,702,463
effective HSP length: 16
effective length of query: 934
effective length of database: 4,572,175
effective search space: 4270411450
effective search space used: 4270411450
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)