BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805016.2.1
(1645 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Ave... 44 4e-004
gb|CN817836.1|CN817836 HRO4462_G03_N06ZS5 Lib AA070E1X Aven... 34 0.38
>gb|CN180781.1|CN180781 As03_isu1961_C ISU cDNA from oat Avena sativa cDNA clone
As03_isu1961, mRNA sequence
Length = 1004
Score = 44.1 bits (22), Expect = 4e-004
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 723 atgagtaagaacaaactggaagccacacaatgcttcggtgag 764
||||||||||||| | ||||||||||||| ||||| |||||
Sbjct: 516 atgagtaagaacatattggaagccacacagggcttcagtgag 557
>gb|CN817836.1|CN817836 HRO4462_G03_N06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4462_G03_N06, mRNA sequence
Length = 707
Score = 34.2 bits (17), Expect = 0.38
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 381 gtcgtcgtcttcatcgt 397
|||||||||||||||||
Sbjct: 689 gtcgtcgtcttcatcgt 673
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4585
Number of Sequences: 8143
Number of extensions: 4585
Number of successful extensions: 1223
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 5
length of query: 1645
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1628
effective length of database: 4,564,032
effective search space: 7430244096
effective search space used: 7430244096
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)