BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804972.2.1
(1311 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Aven... 351 1e-096
gb|CN816401.1|CN816401 HRO4520_C12_F24ZS5 Lib AA071E1X Aven... 84 4e-016
gb|CN819688.1|CN819688 HRO4403_A04_B07ZS5 Lib AA069E1X Aven... 74 4e-013
gb|CN820996.1|CN820996 HRO4422_D03_G06ZS5 Lib AA069E1X Aven... 38 0.019
>gb|CN819392.1|CN819392 HRO4405_E01_I01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_E01_I01, mRNA
sequence
Length = 717
Score = 351 bits (177), Expect = 1e-096
Identities = 435/521 (83%)
Strand = Plus / Plus
Query: 363 tctcccttttatcacaatgtcaaggatgctaaggcagagttacttgacccagcagttaag 422
||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||| ||
Sbjct: 109 tctcccttttatcacaatgtcaaagatcccaaggctgagttacttgacccagcagtcaat 168
Query: 423 ggaacactcaatgttctcggttcatgcaagaaagcttctattaaaaaggtggttgtaaca 482
||||||||||||||||| |||| ||||| |||||||||||||||| ||| |||||||
Sbjct: 169 ggaacactcaatgttctgcgttcctgcaaaaaagcttctattaaaagagtgattgtaacg 228
Query: 483 tcatctatggctgctgtagcctacaacgggaggccaaggactcctgaggtcacagttgac 542
|| || ||||||||||| | |||||| |||| |||| |||||| | || ||||||
Sbjct: 229 tcttcaatggctgctgttggctacaatgggaaaccaaaaactcctaatgtagtagttgat 288
Query: 543 gagacatggttttctgatccacaaatttgtgaaacaaatcagcaatggtatattttgtcc 602
||||||||||| || || || | | ||||||| ||||||||||||| | | |||
Sbjct: 289 gagacatggttctcacatgcagagctatgtgaaaagggtcagcaatggtatgtgctatcc 348
Query: 603 aagacgctggcagaggaggctgcttggaagttctcaagggataatggacttgaaatcgtt 662
||||| || || ||||||||||| ||||||||||||| ||||||| | ||||||| |||
Sbjct: 349 aagacccttgctgaggaggctgcatggaagttctcaaaagataatgcatttgaaatagtt 408
Query: 663 actataaacccagcgatggttattggtcccctgctgcagcctacactaaataccagtgct 722
|| ||||||||||| ||||| |||||||||||| ||||||||||| | ||||| ||||||
Sbjct: 409 acaataaacccagcaatggtcattggtcccctgttgcagcctacattgaatactagtgct 468
Query: 723 gaagcaatcctgaagttaatcaatgggtcatcgtctacatatcccaatttttgctttgga 782
|||||||| ||||| |||||||||| ||||| ||||| || || ||||| ||||||||
Sbjct: 469 gaagcaatattgaagctaatcaatggatcatcttctacgtaccctaatttcagctttgga 528
Query: 783 tgggttaatgtcaaggatgttgccctggcccatatccttgcatacgaggttccctcatca 842
||| | || || || |||||||||||||| ||||| |||||||| || ||||| ||| ||
Sbjct: 529 tggataaacgttaaagatgttgccctggcacatattcttgcatatgaagttccatcagca 588
Query: 843 aatggaaggtactgcatggtggaaagagttgttcactactc 883
|||||||| ||||||||||| |||||||||| |||| ||||
Sbjct: 589 aatggaagatactgcatggttgaaagagttgctcaccactc 629
>gb|CN816401.1|CN816401 HRO4520_C12_F24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4520_C12_F24, mRNA sequence
Length = 735
Score = 83.8 bits (42), Expect = 4e-016
Identities = 81/94 (86%)
Strand = Plus / Plus
Query: 768 aatttttgctttggatgggttaatgtcaaggatgttgccctggcccatatccttgcatac 827
|||||| || |||| ||||| ||||| ||||||||||| ||||| ||| ||||||||| |
Sbjct: 154 aattttagcgttggttgggtgaatgtgaaggatgttgctctggcacatgtccttgcatgc 213
Query: 828 gaggttccctcatcaaatggaaggtactgcatgg 861
|||||||| ||| ||| |||||| ||||||||||
Sbjct: 214 gaggttccttcagcaagtggaagatactgcatgg 247
Score = 36.2 bits (18), Expect = 0.076
Identities = 48/58 (82%)
Strand = Plus / Plus
Query: 666 ataaacccagcgatggttattggtcccctgctgcagcctacactaaataccagtgctg 723
||||||||||| |||||| |||| ||| | ||||| || ||||| || || |||||||
Sbjct: 55 ataaacccagctatggttcttggccccttactgcatcccacactcaacacaagtgctg 112
>gb|CN819688.1|CN819688 HRO4403_A04_B07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_A04_B07, mRNA
sequence
Length = 504
Score = 73.8 bits (37), Expect = 4e-013
Identities = 202/257 (78%)
Strand = Plus / Plus
Query: 807 ctggcccatatccttgcatacgaggttccctcatcaaatggaaggtactgcatggtggaa 866
||||| ||| ||||||||| ||||||||| ||| ||| |||||| |||||||||| ||
Sbjct: 7 ctggcacatgtccttgcatgcgaggttccttcagcaagtggaagatactgcatggctgat 66
Query: 867 agagttgttcactactcagaactggtgaacattatccgcaacatgtatcctacccttcct 926
|||||| | |||| ||| ||| | || || ||||||| | | ||||||||| | |||||
Sbjct: 67 agagttctccacttctcggaagttgtcaaaattatccacgaaatgtatccttctcttccg 126
Query: 927 cttccggacaagtgtgcagatgacaagccgtttgtcccaccctaccaagtatcaaaggag 986
| || || |||||||| ||||||||||| || | ||| | ||||| || |||| ||
Sbjct: 127 gtgcctgagaagtgtgctgatgacaagccattcgctccaacataccaggtctcaagagac 186
Query: 987 aagataaaaagcataggcatcgagttgattccactggagacgagcgtcaaggagaccatc 1046
|||||||| ||| | || |||||||||| || | ||||||| | ||| |||||| ||
Sbjct: 187 aagataaagagcttggggatcgagttgaccccctttgagacgaccctcagggagactata 246
Query: 1047 gaaagcttgaaagagaa 1063
||||||||||| |||||
Sbjct: 247 gaaagcttgaaggagaa 263
>gb|CN820996.1|CN820996 HRO4422_D03_G06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D03_G06, mRNA
sequence
Length = 686
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 797 ggatgttgccctggcccat 815
|||||||||||||||||||
Sbjct: 114 ggatgttgccctggcccat 96
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3180
Number of Sequences: 8143
Number of extensions: 3180
Number of successful extensions: 921
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 9
length of query: 1311
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1295
effective length of database: 4,572,175
effective search space: 5920966625
effective search space used: 5920966625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)