BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.2
(4065 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Aven... 98 8e-020
gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Aven... 52 4e-006
gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Aven... 52 4e-006
gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Aven... 44 0.001
gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Aven... 36 0.24
>gb|CN815647.1|CN815647 HRO4514_A01_A02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_A01_A02, mRNA sequence
Length = 474
Score = 97.6 bits (49), Expect = 8e-020
Identities = 100/117 (85%)
Strand = Plus / Minus
Query: 730 acccaaaggagcgagaagattgaagccagcagaatggaccagacgatgacaatcgttggt 789
|||||||||||||||| ||| || ||||| || || |||||||||||||| ||||| ||
Sbjct: 127 acccaaaggagcgagatgatggaggccaggaggattgaccagacgatgacgatcgtcggg 68
Query: 790 gtcctgttttgccttccaaccaaacctttgagaaagggataaagatggacaatcacc 846
|||||||| |||||||||| || ||| ||||| || || || |||||||||||||||
Sbjct: 67 gtcctgttctgccttccaagcagacccttgaggaatgggtagagatggacaatcacc 11
>gb|CN815813.1|CN815813 HRO4510_G06_M12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4510_G06_M12, mRNA sequence
Length = 521
Score = 52.0 bits (26), Expect = 4e-006
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 855 aaagaatagcttcccaaagagggggccccatgac 888
|||||| |||||||| ||||||||||||||||||
Sbjct: 142 aaagaagagcttcccgaagagggggccccatgac 109
>gb|CN819884.1|CN819884 HRO4407_C09_F17ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4407_C09_F17, mRNA
sequence
Length = 676
Score = 52.0 bits (26), Expect = 4e-006
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||||||| |||||||| || | |||||||| ||||| || || || | ||||||||||
Sbjct: 272 ggatcaatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacgatg 213
Query: 778 acaatcgttggtgt 791
|||||||| |||||
Sbjct: 212 acaatcgtcggtgt 199
>gb|CN819594.1|CN819594 HRO4401_H12_O23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H12_O23, mRNA
sequence
Length = 620
Score = 44.1 bits (22), Expect = 0.001
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 838 acaatcacccaaaatgcaaagaatagcttcccaaagagggggccccatga 887
||||||||||| || |||||||| ||||| || ||||| || ||||||||
Sbjct: 63 acaatcacccagaaggcaaagaagagctttccgaagagcggcccccatga 14
Score = 36.2 bits (18), Expect = 0.24
Identities = 42/50 (84%)
Strand = Plus / Minus
Query: 742 gagaagattgaagccagcagaatggaccagacgatgacaatcgttggtgt 791
|||||||| ||||| || || || | |||||||||||| ||||| |||||
Sbjct: 159 gagaagatcgaagcgaggaggatagcccagacgatgacgatcgtcggtgt 110
>gb|CN817357.1|CN817357 HRO4465_C10_F19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_C10_F19, mRNA sequence
Length = 515
Score = 36.2 bits (18), Expect = 0.24
Identities = 51/62 (82%)
Strand = Plus / Minus
Query: 718 ggatcaatccgaacccaaaggagcgagaagattgaagccagcagaatggaccagacgatg 777
|||||||| |||||||| || | |||||||| ||||| || || || | ||||||||||
Sbjct: 72 ggatcaatacgaacccacagcaaggagaagatcgaagcgaggaggatagcccagacgatg 13
Query: 778 ac 779
||
Sbjct: 12 ac 11
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,173
Number of Sequences: 8143
Number of extensions: 11173
Number of successful extensions: 3161
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3150
Number of HSP's gapped (non-prelim): 11
length of query: 4065
length of database: 4,702,463
effective HSP length: 17
effective length of query: 4048
effective length of database: 4,564,032
effective search space: 18475201536
effective search space used: 18475201536
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)