BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.3
(985 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Aven... 161 1e-039
gb|BE439046.1|BE439046 CDO534_WHE2F0041F ITEC CDO Oat cDNA ... 36 0.057
gb|CN816911.1|CN816911 HRO4526_B07_C14ZS5 Lib AA071E1X Aven... 36 0.057
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 36 0.057
gb|M73232.1|ASTATPASEH Avena sativa vacuolar H+-ATPase 16 k... 34 0.23
>gb|CN815574.1|CN815574 HRO4513_B10_C19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B10_C19, mRNA sequence
Length = 716
Score = 161 bits (81), Expect = 1e-039
Identities = 129/145 (88%)
Strand = Plus / Plus
Query: 424 ttaagcggacgggatctccacctcgccgtcgtcaatctcctgctgcaggtccttggggtc 483
||||||||| |||||||| |||||||| ||||| |||||| ||||||||||||||||||
Sbjct: 287 ttaagcggaggggatctcgacctcgccttcgtcgatctccgtctgcaggtccttggggtc 346
Query: 484 cttgccgtcgacggtgcacccgacgctgacgcaggtaccgaggatctccttgacggtgcc 543
||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||| || ||
Sbjct: 347 cttcccgtcaacggtgcacccaacgctgacgcatgtaccgaggatctccttgacagtccc 406
Query: 544 ggccaattccttggccatggacctg 568
|| | ||||||||||||||||||
Sbjct: 407 ggtaatctccttggccatggacctg 431
>gb|BE439046.1|BE439046 CDO534_WHE2F0041F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO534_WHE2, mRNA sequence
Length = 411
Score = 36.2 bits (18), Expect = 0.057
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 292 agcaaaactccgctgtga 309
||||||||||||||||||
Sbjct: 392 agcaaaactccgctgtga 409
>gb|CN816911.1|CN816911 HRO4526_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_B07_C14, mRNA sequence
Length = 802
Score = 36.2 bits (18), Expect = 0.057
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 292 agcaaaactccgctgtga 309
||||||||||||||||||
Sbjct: 523 agcaaaactccgctgtga 540
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
sequence
Length = 16091
Score = 36.2 bits (18), Expect = 0.057
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 944 gcggcggcagttgcggga 961
||||||||||||||||||
Sbjct: 815 gcggcggcagttgcggga 798
>gb|M73232.1|ASTATPASEH Avena sativa vacuolar H+-ATPase 16 kDa proteolipid subunit
(vatp-P1) mRNA, complete cds
Length = 821
Score = 34.2 bits (17), Expect = 0.23
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 679 gacgagcgccgcggcgg 695
|||||||||||||||||
Sbjct: 199 gacgagcgccgcggcgg 183
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2271
Number of Sequences: 8143
Number of extensions: 2271
Number of successful extensions: 575
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 6
length of query: 985
length of database: 4,702,463
effective HSP length: 16
effective length of query: 969
effective length of database: 4,572,175
effective search space: 4430437575
effective search space used: 4430437575
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)