BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804908.2.1
(1118 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818518.1|CN818518 HRO4459_F04_K07ZS5 Lib AA070E1X Aven... 72 1e-012
gb|CN820708.1|CN820708 HRO4416_F04_L08ZS5 Lib AA069E1X Aven... 72 1e-012
gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Aven... 40 0.004
gb|CN820243.1|CN820243 HRO4417_B07_C13ZS5 Lib AA069E1X Aven... 40 0.004
gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Aven... 40 0.004
gb|CN821349.1|CN821349 HRO4424_C10_F20ZS5 Lib AA069E1X Aven... 40 0.004
gb|CN820277.1|CN820277 HRO4417_E10_I19ZS5 Lib AA069E1X Aven... 36 0.065
gb|CN818207.1|CN818207 HRO4470_H01_P02ZS5 Lib AA070E1X Aven... 34 0.26
gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Aven... 34 0.26
>gb|CN818518.1|CN818518 HRO4459_F04_K07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_F04_K07, mRNA sequence
Length = 763
Score = 71.9 bits (36), Expect = 1e-012
Identities = 213/272 (78%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||| || ||||||| || |||||||| ||||| | ||| ||||| ||||| || ||
Sbjct: 359 aagcgtgaaaaccacatggctgatgctttagggtgtcgggagagcccattcttataatca 300
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| || || || || |||||||||||| | ||||| |||||||| ||||| |||| |||
Sbjct: 299 acatagacaatcccaaacctcttggtgaatcccatcgcccactcaaagttatccaagaat 240
Query: 405 gaccacgcaaagtacccgcggacatcagctccgtccttgatcgcttgcgcaactgaattg 464
||||| |||||||| || || ||||| || || ||||| || |||| || |||| |
Sbjct: 239 gaccatgcaaagtatccacgaacatcggcaccatcctttattgcttctgcgactgcacca 180
Query: 465 aggtaccctttgaagtaaccgaccctcgtcgtgtcgtttaggacctggtcaagcgttgcg 524
| || ||||||||| |||| |||||| | || || |||| ||||| ||||| |||||
Sbjct: 179 acatatcctttgaagaaaccaaccctctttgtatcatttaaaacctgatcaagtgttgct 120
Query: 525 gattgatcgtcctcttcatccatgccattctc 556
||| |||| || || |||||||||||||||||
Sbjct: 119 gatggatcatcttcatcatccatgccattctc 88
>gb|CN820708.1|CN820708 HRO4416_F04_L08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_F04_L08, mRNA
sequence
Length = 780
Score = 71.9 bits (36), Expect = 1e-012
Identities = 213/272 (78%)
Strand = Plus / Minus
Query: 285 aagcgcgagaaccacagcgccgatgctttcgggtgcctggacagcccgttcttgtagtcc 344
||||| || ||||||| || |||||||| ||||| | ||| ||||| ||||| || ||
Sbjct: 354 aagcgtgaaaaccacatggctgatgctttagggtgtcgggagagcccattcttataatca 295
Query: 345 acgtaaactatgccgaacctcttggtgtagcccattgcccactcgaagttgtccaggaac 404
|| || || || || |||||||||||| | ||||| |||||||| ||||| |||| |||
Sbjct: 294 acatagacaatcccaaacctcttggtgaatcccatcgcccactcaaagttatccaagaat 235
Query: 405 gaccacgcaaagtacccgcggacatcagctccgtccttgatcgcttgcgcaactgaattg 464
||||| |||||||| || || ||||| || || ||||| || |||| || |||| |
Sbjct: 234 gaccatgcaaagtatccacgaacatcggcaccatcctttattgcttctgcgactgcacca 175
Query: 465 aggtaccctttgaagtaaccgaccctcgtcgtgtcgtttaggacctggtcaagcgttgcg 524
| || ||||||||| |||| |||||| | || || |||| ||||| ||||| |||||
Sbjct: 174 acatatcctttgaagaaaccaaccctctttgtatcatttaaaacctgatcaagtgttgct 115
Query: 525 gattgatcgtcctcttcatccatgccattctc 556
||| |||| || || |||||||||||||||||
Sbjct: 114 gatggatcatcttcatcatccatgccattctc 83
>gb|CN815884.1|CN815884 HRO4511_E10_J19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E10_J19, mRNA sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.004
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||| ||||||||||||| ||||| ||||||||
Sbjct: 538 ccactcaaagttgtccaggagagaccatgcaaagta 503
>gb|CN820243.1|CN820243 HRO4417_B07_C13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_B07_C13, mRNA
sequence
Length = 335
Score = 40.1 bits (20), Expect = 0.004
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||| ||||||||||||| ||||| ||||||||
Sbjct: 55 ccactcaaagttgtccaggagagaccatgcaaagta 20
>gb|CN820950.1|CN820950 HRO4421_G11_M21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4421_G11_M21, mRNA
sequence
Length = 840
Score = 40.1 bits (20), Expect = 0.004
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||| ||||||||||||| ||||| ||||||||
Sbjct: 623 ccactcaaagttgtccaggagagaccatgcaaagta 588
>gb|CN821349.1|CN821349 HRO4424_C10_F20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_C10_F20, mRNA
sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.004
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagta 418
|||||| ||||||||||||| ||||| ||||||||
Sbjct: 364 ccactcaaagttgtccaggagagaccatgcaaagta 329
>gb|CN820277.1|CN820277 HRO4417_E10_I19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4417_E10_I19, mRNA
sequence
Length = 789
Score = 36.2 bits (18), Expect = 0.065
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 540 tcatccatgccattctcagtaa 561
|||||||| |||||||||||||
Sbjct: 281 tcatccataccattctcagtaa 260
>gb|CN818207.1|CN818207 HRO4470_H01_P02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_H01_P02, mRNA sequence
Length = 698
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 62 catttcagctagtgctg 78
|||||||||||||||||
Sbjct: 497 catttcagctagtgctg 513
>gb|CN820845.1|CN820845 HRO4420_E10_J20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_E10_J20, mRNA
sequence
Length = 776
Score = 34.2 bits (17), Expect = 0.26
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1036 catcaacagcagcagca 1052
|||||||||||||||||
Sbjct: 460 catcaacagcagcagca 476
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3191
Number of Sequences: 8143
Number of extensions: 3191
Number of successful extensions: 894
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 13
length of query: 1118
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1102
effective length of database: 4,572,175
effective search space: 5038536850
effective search space used: 5038536850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)