BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804904.2.3
(801 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819453.1|CN819453 HRO4406_A10_A20ZS5 Lib AA069E1X Aven... 341 6e-094
gb|CN819570.1|CN819570 HRO4401_F11_K21ZS5 Lib AA069E1X Aven... 80 3e-015
>gb|CN819453.1|CN819453 HRO4406_A10_A20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_A10_A20, mRNA
sequence
Length = 567
Score = 341 bits (172), Expect = 6e-094
Identities = 289/328 (88%)
Strand = Plus / Plus
Query: 158 ggccgcctcgtcgtcatcgtcgatgtggtcgaccagaacagggcacttgtggacgcccct 217
||||||||||| ||||||||||| || |||||||||||| ||||||||||||| || ||
Sbjct: 4 ggccgcctcgtggtcatcgtcgacgtcgtcgaccagaaccgggcacttgtggatgctccc 63
Query: 218 gatatggtcaggtgccagattaacttcaaacggctctcacttaccgacatcaagattgac 277
||||||||||||||||||||||||||||| || || || || || ||||| ||||| |||
Sbjct: 64 gatatggtcaggtgccagattaacttcaagcgtctttctctgactgacattaagatcgac 123
Query: 278 atcaaacgtgtccccaagaagtcaaccttgatcaaggctatggaggaagctgatgtgaag 337
||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct: 124 atcaagcgtgtccccaagaaggcaactttgatcaaggcaatggaggaagctgatgtgaag 183
Query: 338 actaagtgggagaacagctcatggggcaagaagctgattgtccagaagaggagggctgca 397
| ||||||||||||||||| |||||||||||||| |||||||||||||| || || |
Sbjct: 184 agcaagtgggagaacagctcgtggggcaagaagcttattgtccagaagagaagagcgtcg 243
Query: 398 ctcagtgactttgacaggttcaaggtcatgctggcaaggatcaagaggggtggtgctatc 457
|| | ||||||||||||||||||||||||| |||| | ||| ||||| || |||||||||
Sbjct: 244 ctgaatgactttgacaggttcaaggtcatgttggctaagattaagagaggcggtgctatc 303
Query: 458 aggcaagagctctccaagctgaagaagg 485
||||||||||| ||||||| |||||||
Sbjct: 304 aggcaagagcttgccaagctcaagaagg 331
Score = 44.1 bits (22), Expect = 2e-004
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 506 tttggtggatgacatgtt-agtttttggtttcatgttggatc 546
|||||||||||||||||| ||||||| ||| || ||||||||
Sbjct: 352 tttggtggatgacatgttgagttttttgttccaagttggatc 393
>gb|CN819570.1|CN819570 HRO4401_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_F11_K21, mRNA
sequence
Length = 275
Score = 79.8 bits (40), Expect = 3e-015
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 414 ggttcaaggtcatgctggcaaggatcaagaggggtggtgctatcaggcaagagctctcca 473
||||||||||||| ||||| | |||||||||||| || ||||||||||||||||| || |
Sbjct: 10 ggttcaaggtcattctggccaagatcaagaggggaggagctatcaggcaagagctttcga 69
Query: 474 agctgaagaagg 485
|||| |||||||
Sbjct: 70 agcttaagaagg 81
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2106
Number of Sequences: 8143
Number of extensions: 2106
Number of successful extensions: 622
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 3
length of query: 801
length of database: 4,702,463
effective HSP length: 16
effective length of query: 785
effective length of database: 4,572,175
effective search space: 3589157375
effective search space used: 3589157375
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)