BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804904.2.1
(690 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819453.1|CN819453 HRO4406_A10_A20ZS5 Lib AA069E1X Aven... 361 e-100
gb|CN819570.1|CN819570 HRO4401_F11_K21ZS5 Lib AA069E1X Aven... 94 2e-019
>gb|CN819453.1|CN819453 HRO4406_A10_A20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4406_A10_A20, mRNA
sequence
Length = 567
Score = 361 bits (182), Expect = e-100
Identities = 302/342 (88%)
Strand = Plus / Plus
Query: 130 tatggccgcctcgtcgtcatcgtcgacgtcgtcgaccagaacagggctcttgtggatgcc 189
|||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 1 tatggccgcctcgtggtcatcgtcgacgtcgtcgaccagaaccgggcacttgtggatgct 60
Query: 190 cccgacatggttcgttgccaaatgaacttcaagcggctttccctgactgacatcaagatt 249
||||| ||||| | ||||| || ||||||||||| ||||| ||||||||||| |||||
Sbjct: 61 cccgatatggtcaggtgccagattaacttcaagcgtctttctctgactgacattaagatc 120
Query: 250 gacattaaacgtgtcccaaagaagactacactgatcaaggcaatggaggaagctgatgtg 309
||||| || |||||||| |||||| | || |||||||||||||||||||||||||||||
Sbjct: 121 gacatcaagcgtgtccccaagaaggcaactttgatcaaggcaatggaggaagctgatgtg 180
Query: 310 aaaagcaagtgggagaatagctcatggggcaagaagctgattgttcagaagaggagagca 369
|| |||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||
Sbjct: 181 aagagcaagtgggagaacagctcgtggggcaagaagcttattgtccagaagagaagagcg 240
Query: 370 tcactcaatgactttgacaggttcaaggtcatgttggcgaagatcaagaggggtggtgcc 429
|| || |||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct: 241 tcgctgaatgactttgacaggttcaaggtcatgttggctaagattaagagaggcggtgct 300
Query: 430 atcaggcaagagcttgctaagcttaaaaaggtggctgctgct 471
||||||||||||||||| ||||| || |||| || |||||||
Sbjct: 301 atcaggcaagagcttgccaagctcaagaaggaggttgctgct 342
>gb|CN819570.1|CN819570 HRO4401_F11_K21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_F11_K21, mRNA
sequence
Length = 275
Score = 93.7 bits (47), Expect = 2e-019
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 389 ggttcaaggtcatgttggcgaagatcaagaggggtggtgccatcaggcaagagcttgcta 448
||||||||||||| |||| |||||||||||||| || || ||||||||||||||| | |
Sbjct: 10 ggttcaaggtcattctggccaagatcaagaggggaggagctatcaggcaagagctttcga 69
Query: 449 agcttaaaaaggtggctgctgctgcttagat 479
||||||| |||| || |||||||||||||||
Sbjct: 70 agcttaagaaggaggttgctgctgcttagat 100
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2129
Number of Sequences: 8143
Number of extensions: 2129
Number of successful extensions: 694
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 2
length of query: 690
length of database: 4,702,463
effective HSP length: 16
effective length of query: 674
effective length of database: 4,572,175
effective search space: 3081645950
effective search space used: 3081645950
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)