BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738978.2.1
(572 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821192.1|CN821192 HRO4428_E07_J14ZS5 Lib AA069E1X Aven... 34 0.13
>gb|CN821192.1|CN821192 HRO4428_E07_J14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E07_J14, mRNA
sequence
Length = 586
Score = 34.2 bits (17), Expect = 0.13
Identities = 41/49 (83%)
Strand = Plus / Minus
Query: 381 actggcagaagcacccctgctgcgccttgaggttggagcagcacgacgc 429
||||||||||||| ||| |||||| |||||||||||||| |||||
Sbjct: 266 actggcagaagcagccccgctgcgagcgcaggttggagcagcaggacgc 218
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1080
Number of Sequences: 8143
Number of extensions: 1080
Number of successful extensions: 315
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 1
length of query: 572
length of database: 4,702,463
effective HSP length: 16
effective length of query: 556
effective length of database: 4,572,175
effective search space: 2542129300
effective search space used: 2542129300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)