BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738959.2.3
(725 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Aven... 283 1e-076
>gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_C09_E18, mRNA sequence
Length = 476
Score = 283 bits (143), Expect = 1e-076
Identities = 215/239 (89%)
Strand = Plus / Plus
Query: 187 attaacttggggaacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||| | |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 3 attaacattgggaacccaggtgagttcaccatgctggaactcgctgagaatgtgaaggag 62
Query: 247 ttgatcaacccagatgtgacagtgacgatgaccgagaacactcctgatgacccccgccag 306
||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 63 ctgatcaacccagaggtgacagtgacgatgactgagaacactcctgatgaccctcgccag 122
Query: 307 aggaagccggacatcacaaaggcgaaggaagttctgggatgggagcccaagatcgtcctg 366
|||||||| ||||||| ||||| ||||| |||||| |||||||||||| ||||||||
Sbjct: 123 aggaagcccgacatcagcaaggccaaggagcttctggactgggagcccaaggtcgtcctg 182
Query: 367 cgggacggcttggtgctcatggaggatgatttccgggagcgcctgaccgtgcccaagaa 425
|| |||||||||||||||||||| || |||||| | ||||||||| | |||||||||||
Sbjct: 183 cgcgacggcttggtgctcatggaagacgatttcagagagcgcctggcagtgcccaagaa 241
Score = 44.1 bits (22), Expect = 2e-004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 524 cggaatttgagttccaataaac 545
||||||||||||||||||||||
Sbjct: 337 cggaatttgagttccaataaac 358
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1674
Number of Sequences: 8143
Number of extensions: 1674
Number of successful extensions: 404
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 3
length of query: 725
length of database: 4,702,463
effective HSP length: 16
effective length of query: 709
effective length of database: 4,572,175
effective search space: 3241672075
effective search space used: 3241672075
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)