BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738959.2.2
(1454 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Aven... 244 2e-064
gb|CN817228.1|CN817228 HRO4464_D04_G08ZS5 Lib AA070E1X Aven... 34 0.33
gb|CN819699.1|CN819699 HRO4403_B04_D07ZS5 Lib AA069E1X Aven... 34 0.33
>gb|CN815139.1|CN815139 HRO4506_C09_E18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_C09_E18, mRNA sequence
Length = 476
Score = 244 bits (123), Expect = 2e-064
Identities = 210/239 (87%)
Strand = Plus / Minus
Query: 312 ttcttgggcacggccaggcgctcccggaaatcatcctccatgagcaccaagccgtccttc 371
||||||||||| ||||||||||| | |||||| || |||||||||||||||||||| |
Sbjct: 241 ttcttgggcactgccaggcgctctctgaaatcgtcttccatgagcaccaagccgtcgcgc 182
Query: 372 aggacgatcttgggctcccaccctagaacttcctttgccttggtgatgtccggcttcctc 431
||||||| |||||||||||| | |||| ||||| |||||| ||||||| |||||||||
Sbjct: 181 aggacgaccttgggctcccagtccagaagctccttggccttgctgatgtcgggcttcctc 122
Query: 432 tggcggggatcatcaggagtgttctcggtcatcgtcactgttatatctgggttaatcaac 491
||||| || ||||||||||||||||| |||||||||||||| | |||||||| |||| |
Sbjct: 121 tggcgagggtcatcaggagtgttctcagtcatcgtcactgtcacctctgggttgatcagc 62
Query: 492 tccttcacattctcagcaagttccagcatggtgaattcacctgggttccccaagttaat 550
||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||
Sbjct: 61 tccttcacattctcagcgagttccagcatggtgaactcacctgggttcccaatgttaat 3
Score = 48.1 bits (24), Expect = 2e-005
Identities = 74/91 (81%), Gaps = 6/91 (6%)
Strand = Plus / Minus
Query: 132 gccagccctgtatgaaaattctaatgatacaatccttcaaggtgatcga------cgaag 185
|||||||| ||||||| ||||||||||||||| |||||| ||| ||| |||||
Sbjct: 427 gccagccccgtatgaagtgtctaatgatacaatctttcaagttgaacgatgaaaacgaag 368
Query: 186 gtatattccgtttattggaactcaaattccg 216
|||| | ||||||||||||||||||||||
Sbjct: 367 atataattggtttattggaactcaaattccg 337
Score = 38.2 bits (19), Expect = 0.021
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 247 ccaactatgagtatgctcc 265
|||||||||||||||||||
Sbjct: 309 ccaactatgagtatgctcc 291
>gb|CN817228.1|CN817228 HRO4464_D04_G08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_D04_G08, mRNA sequence
Length = 457
Score = 34.2 bits (17), Expect = 0.33
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 931 caactctctttgcaagg 947
|||||||||||||||||
Sbjct: 157 caactctctttgcaagg 141
>gb|CN819699.1|CN819699 HRO4403_B04_D07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B04_D07, mRNA
sequence
Length = 870
Score = 34.2 bits (17), Expect = 0.33
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1204 ggtgcgagccgatgaag 1220
|||||||||||||||||
Sbjct: 732 ggtgcgagccgatgaag 748
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3558
Number of Sequences: 8143
Number of extensions: 3558
Number of successful extensions: 996
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 6
length of query: 1454
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1437
effective length of database: 4,564,032
effective search space: 6558513984
effective search space used: 6558513984
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)