BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716323.2.2
         (764 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AM071407.1|  Avena sativa mRNA for CBF-like transcriptio...    38   0.011

>emb|AM071407.1| Avena sativa mRNA for CBF-like transcription factor (cbf2 gene)
          Length = 965

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 72  ccagggcagcgcggcgagc 90
           |||||||||||||||||||
Sbjct: 329 ccagggcagcgcggcgagc 347



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1497
Number of Sequences: 8143
Number of extensions: 1497
Number of successful extensions: 444
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 1
length of query: 764
length of database: 4,702,463
effective HSP length: 16
effective length of query: 748
effective length of database: 4,572,175
effective search space: 3419986900
effective search space used: 3419986900
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)