BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716236.2.2
(868 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Aven... 363 e-100
gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Aven... 240 2e-063
gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Aven... 222 4e-058
gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Aven... 167 2e-041
gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Aven... 149 5e-036
gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Aven... 143 3e-034
gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Aven... 115 7e-026
gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Aven... 107 2e-023
gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Aven... 101 1e-021
gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Aven... 101 1e-021
gb|CN814650.1|CN814650 HRO4501_A06_A11ZS5 Lib AA071E1X Aven... 86 6e-017
gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Aven... 82 9e-016
gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Aven... 64 2e-010
gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Aven... 62 9e-010
gb|CN821032.1|CN821032 HRO4422_G06_M12ZS5 Lib AA069E1X Aven... 62 9e-010
gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Aven... 54 2e-007
gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Aven... 48 1e-005
>gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_C11_E21, mRNA
sequence
Length = 657
Score = 363 bits (183), Expect = e-100
Identities = 315/359 (87%)
Strand = Plus / Plus
Query: 202 gttccactggcaggcaaccatcatgggtcctcctgatagtccatatgctggaggtgtttt 261
||||||||||| |||| || ||||| || ||||| ||||| ||||| ||||| |||||
Sbjct: 11 gttccactggcttccaacgattatgggaccccctgacagtccctatgccggaggcgtttt 70
Query: 262 cttggtgaacattcatttcccgccagactaccccttcaagcctccaaaggtatcttttaa 321
||| |||||||||||||| || || || ||||||||||| || || ||||||||||| ||
Sbjct: 71 cttagtgaacattcattttcctccggattaccccttcaaacccccgaaggtatctttcaa 130
Query: 322 gacgaaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattcttaa 381
||| |||||||||||||| || ||||| || |||||||||||||| ||||| ||||||||
Sbjct: 131 gacaaaggtcttccatcctaatatcaacagcaatggaagcatatgccttgatattcttaa 190
Query: 382 ggagcagtggagccctgctttgacaatctctaaggttttgctttctatctgctccctgct 441
|||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 191 ggagcagtggagccctgctttgacgatctccaaggtattgctctctatctgttccctgct 250
Query: 442 tactgatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacgga 501
|| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 251 gaccgatcccaacccggacgacccccttgtccctgagattgcccacatgtacaagacgga 310
Query: 502 tcggcctaagtacgaggcgacagcccgcagctggacccagaagtacgccatgggatgaa 560
||| | ||||||||| | ||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 311 ccggtcaaagtacgagacaacagcccgcagctggacgcagaagtacgccatgggttgaa 369
>gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C01_F02, mRNA sequence
Length = 510
Score = 240 bits (121), Expect = 2e-063
Identities = 175/193 (90%)
Strand = Plus / Plus
Query: 368 cttgacattcttaaggagcagtggagccctgctttgacaatctctaaggttttgctttct 427
||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||
Sbjct: 14 cttgatattcttaaggagcagtggagccctgctttgacgatctccaaggtattgctctct 73
Query: 428 atctgctccctgcttactgatcccaacccagacgaccctcttgtccctgagattgctcac 487
||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||| |||
Sbjct: 74 atctgttccctgctgaccgatcccaacccggacgacccccttgtccctgagattgcccac 133
Query: 488 atgtacaagacggatcggcctaagtacgaggcgacagcccgcagctggacccagaagtac 547
|||||||||||||| ||| | ||||||||| | ||||||||||||||||| |||||||||
Sbjct: 134 atgtacaagacggaccggtcaaagtacgagacaacagcccgcagctggacgcagaagtac 193
Query: 548 gccatgggatgaa 560
|||||||| ||||
Sbjct: 194 gccatgggttgaa 206
>gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_E06_I11, mRNA sequence
Length = 409
Score = 222 bits (112), Expect = 4e-058
Identities = 158/172 (91%), Gaps = 1/172 (0%)
Strand = Plus / Plus
Query: 388 gtggagccctgctttgacaatctctaaggttttgctttctatctgctccctgcttactga 447
||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||
Sbjct: 10 gtggagccctgctttgaca-tctctaaggttttgctttcaatctgctcgctgcttaccga 68
Query: 448 tcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacggatcggcc 507
|||||||| ||||||||||||||||||||||| || || |||||||||||||||||| |
Sbjct: 69 ccccaacccggacgaccctcttgtccctgagatcgcccatatgtacaagacggatcggtc 128
Query: 508 taagtacgaggcgacagcccgcagctggacccagaagtacgccatgggatga 559
||||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 129 gaagtacgagacgacagcccgcagctggacgcagaagtatgccatgggatga 180
>gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D03_G05, mRNA
sequence
Length = 393
Score = 167 bits (84), Expect = 2e-041
Identities = 120/132 (90%)
Strand = Plus / Plus
Query: 428 atctgctccctgcttactgatcccaacccagacgaccctcttgtccctgagattgctcac 487
|||||||| |||||||| || |||||||| ||||||||||||||||||||||| || ||
Sbjct: 16 atctgctcgctgcttaccgaccccaacccggacgaccctcttgtccctgagatcgcccat 75
Query: 488 atgtacaagacggatcggcctaagtacgaggcgacagcccgcagctggacccagaagtac 547
|||||||||||||||||| | ||||||||| ||||||||||||||||||| ||||||||
Sbjct: 76 atgtacaagacggatcggtcaaagtacgagacgacagcccgcagctggacgcagaagtat 135
Query: 548 gccatgggatga 559
||||||||||||
Sbjct: 136 gccatgggatga 147
>gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F05_L09, mRNA
sequence
Length = 648
Score = 149 bits (75), Expect = 5e-036
Identities = 288/359 (80%)
Strand = Plus / Minus
Query: 197 gatatgttccactggcaggcaaccatcatgggtcctcctgatagtccatatgctggaggt 256
|||||||| |||||||||||||| || |||||||| | || || || || |||||||
Sbjct: 581 gatatgtttcactggcaggcaacgattatgggtccgtcagacagcccttacagtggaggt 522
Query: 257 gttttcttggtgaacattcatttcccgccagactaccccttcaagcctccaaaggtatct 316
|| |||||||| | |||||||| || || |||||||| ||||| || || ||||| ||
Sbjct: 521 gtcttcttggttacaattcattttcctccggactacccgttcaaaccacctaaggtcgct 462
Query: 317 tttaagacgaaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacatt 376
|| || || ||||| |||||||||||| | || || ||||| ||||| || ||||| ||
Sbjct: 461 ttcaaaacaaaggtgttccatccaaacgttaacagcaatggcagcatctgccttgatatc 402
Query: 377 cttaaggagcagtggagccctgctttgacaatctctaaggttttgctttctatctgctcc 436
| |||||||||||||| ||||| |||||||||| ||||| | || || |||||||||
Sbjct: 401 ttgaaggagcagtggagtcctgcactgacaatctcaaaggtgctcctctcaatctgctcc 342
Query: 437 ctgcttactgatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaag 496
|| || || || || ||||| ||||| || || || || ||||||||||||||||||||
Sbjct: 341 ctactgacggacccaaaccccgacgatccactggttccggagattgctcacatgtacaaa 282
Query: 497 acggatcggcctaagtacgaggcgacagcccgcagctggacccagaagtacgccatggg 555
||||||| | ||||||||| | || || | ||||||||||||||||||||||||||
Sbjct: 281 gcggatcgaacaaagtacgagtctaccgcgaggagctggacccagaagtacgccatggg 223
>gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E09_J18, mRNA
sequence
Length = 592
Score = 143 bits (72), Expect = 3e-034
Identities = 240/296 (81%)
Strand = Plus / Plus
Query: 260 ttcttggtgaacattcatttcccgccagactaccccttcaagcctccaaaggtatctttt 319
|||||||||||||||||||| || ||||| || || |||||||| || ||||| |||||
Sbjct: 32 ttcttggtgaacattcattttccaccagattatcctttcaagccaccgaaggtctctttc 91
Query: 320 aagacgaaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattctt 379
|| ||||||||||| || |||||||| || || || ||||| || |||||||||||
Sbjct: 92 cgcaccaaggtcttccacccgaacatcaacagcaacggcagcatttgccttgacattctc 151
Query: 380 aaggagcagtggagccctgctttgacaatctctaaggttttgctttctatctgctccctg 439
||||||||||||||||| ||| |||| || || ||||| | || || |||||||| ||
Sbjct: 152 aaggagcagtggagcccggctctgaccatatcaaaggtcctcctgtcaatctgctcgttg 211
Query: 440 cttactgatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacg 499
|| || || || ||||| || ||||| || || |||||||| || ||||||||||||||
Sbjct: 212 ctgacggacccgaaccctgatgacccgctggtgcctgagatcgcccacatgtacaagact 271
Query: 500 gatcggcctaagtacgaggcgacagcccgcagctggacccagaagtacgccatggg 555
||| || | ||||||||| | || || ||| |||||| |||||||||||||||||
Sbjct: 272 gatagggccaagtacgagtccactgctcgctcctggacgcagaagtacgccatggg 327
>gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G07_M14, mRNA sequence
Length = 532
Score = 115 bits (58), Expect = 7e-026
Identities = 187/230 (81%)
Strand = Plus / Plus
Query: 326 aaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattcttaaggag 385
||||||||||| || |||||||| || || || ||||| || ||||||||||| ||||||
Sbjct: 58 aaggtcttccacccgaacatcaacagcaacggcagcatttgccttgacattctcaaggag 117
Query: 386 cagtggagccctgctttgacaatctctaaggttttgctttctatctgctccctgcttact 445
||||||||||| ||| |||| || || ||||| | || || |||||||| |||| ||
Sbjct: 118 cagtggagcccggctctgaccatatcaaaggtcctcctgtcaatctgctcgttgctgacg 177
Query: 446 gatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacggatcgg 505
|| || ||||| || |||||||| || |||||||| || |||||||||||||| ||| ||
Sbjct: 178 gacccgaaccctgatgaccctctggtgcctgagatcgcccacatgtacaagactgatagg 237
Query: 506 cctaagtacgaggcgacagcccgcagctggacccagaagtacgccatggg 555
| ||||||||| | || || ||| |||||| |||||||| ||||||||
Sbjct: 238 gccaagtacgagtccactgctcgctcctggacgcagaagtatgccatggg 287
>gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_F10_L20, mRNA sequence
Length = 508
Score = 107 bits (54), Expect = 2e-023
Identities = 186/230 (80%)
Strand = Plus / Plus
Query: 326 aaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattcttaaggag 385
||||||||||| || |||||||| || || || ||||| || ||||||||||| ||||||
Sbjct: 20 aaggtcttccacccgaacatcaacagcaacggcagcatttgccttgacattctcaaggag 79
Query: 386 cagtggagccctgctttgacaatctctaaggttttgctttctatctgctccctgcttact 445
||||||||||| ||| |||| || || ||||| | || || |||||||| |||| ||
Sbjct: 80 cagtggagcccggctctgaccatatcaaaggtcctcctgtcaatctgctcgttgctgacg 139
Query: 446 gatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacggatcgg 505
|| || ||||| || |||||||| || |||||||| || |||||||||||||| ||| ||
Sbjct: 140 gacccgaaccctgatgaccctctggtgcctgagatcgcccacatgtacaagactgatagg 199
Query: 506 cctaagtacgaggcgacagcccgcagctggacccagaagtacgccatggg 555
| ||||| ||| | || || ||| |||||| |||||||| ||||||||
Sbjct: 200 gccaagtatgagtccactgctcgctcctggacgcagaagtatgccatggg 249
>gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B08_C16, mRNA
sequence
Length = 560
Score = 101 bits (51), Expect = 1e-021
Identities = 159/195 (81%)
Strand = Plus / Plus
Query: 323 acgaaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattcttaag 382
|||||||| ||||| ||||||||||| || || || ||||| || || ||||| || |||
Sbjct: 53 acgaaggtgttccacccaaacatcaacagcaacgggagcatttgcctggacatcctgaag 112
Query: 383 gagcagtggagccctgctttgacaatctctaaggttttgctttctatctgctccctgctt 442
|| || ||||| || ||| | || ||||| ||||| ||||| || ||||||||||||||
Sbjct: 113 gaccaatggagtcccgctctaaccatctccaaggtgttgctgtccatctgctccctgctg 172
Query: 443 actgatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacggat 502
|| || || ||||| ||||||||||| || || ||||| || |||||||||||||| ||
Sbjct: 173 acagacccgaaccccgacgaccctctggttcccgagatcgcccacatgtacaagacagac 232
Query: 503 cggcctaagtacgag 517
|||| |||||||||
Sbjct: 233 cggcacaagtacgag 247
>gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B09_D18, mRNA
sequence
Length = 540
Score = 101 bits (51), Expect = 1e-021
Identities = 159/195 (81%)
Strand = Plus / Plus
Query: 323 acgaaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattcttaag 382
|||||||| ||||| ||||||||||| || || || ||||| || || ||||| || |||
Sbjct: 49 acgaaggtgttccacccaaacatcaacagcaacgggagcatttgcctggacatcctgaag 108
Query: 383 gagcagtggagccctgctttgacaatctctaaggttttgctttctatctgctccctgctt 442
|| || ||||| || ||| | || ||||| ||||| ||||| || ||||||||||||||
Sbjct: 109 gaccaatggagtcccgctctaaccatctccaaggtgttgctgtccatctgctccctgctg 168
Query: 443 actgatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacggat 502
|| || || ||||| ||||||||||| || || ||||| || |||||||||||||| ||
Sbjct: 169 acagacccgaaccccgacgaccctctggttcccgagatcgcccacatgtacaagacagac 228
Query: 503 cggcctaagtacgag 517
|||| |||||||||
Sbjct: 229 cggcacaagtacgag 243
>gb|CN814650.1|CN814650 HRO4501_A06_A11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_A06_A11, mRNA sequence
Length = 245
Score = 85.7 bits (43), Expect = 6e-017
Identities = 94/111 (84%)
Strand = Plus / Plus
Query: 449 cccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacggatcggcct 508
|||||||| ||||||||||||||||||||||| | | || ||||||||| ||| |
Sbjct: 5 cccaacccggacgaccctcttgtccctgagatcgtttttatccccaagacggagcggtcg 64
Query: 509 aagtacgaggcgacagcccgcagctggacccagaagtacgccatgggatga 559
||||| ||| |||||||||||| |||||| |||||||| ||||||||||||
Sbjct: 65 aagtatgagacgacagcccgcatctggacgcagaagtatgccatgggatga 115
>gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H03_P06, mRNA sequence
Length = 377
Score = 81.8 bits (41), Expect = 9e-016
Identities = 158/197 (80%)
Strand = Plus / Plus
Query: 359 agcatatgtcttgacattcttaaggagcagtggagccctgctttgacaatctctaaggtt 418
||||| || ||||||||||| |||||||||||||||| ||| |||| || || |||||
Sbjct: 6 agcatttgccttgacattctctaggagcagtggagcccggctctgaccatatcaaaggtc 65
Query: 419 ttgctttctatctgctccctgcttactgatcccaacccagacgaccctcttgtccctgag 478
| || || |||||||| |||| || || || ||||| || |||||||| || ||||||
Sbjct: 66 ctcctgtcaatctgctcgttgctgacggacccgaaccctgatgaccctctggtgcctgag 125
Query: 479 attgctcacatgtacaagacggatcggcctaagtacgaggcgacagcccgcagctggacc 538
|| || |||||||||||||| ||| || | ||||| ||| | || || ||| ||||||
Sbjct: 126 atcgcccacatgtacaagactgatagggccaagtatgagtccactgctcgctcctggacg 185
Query: 539 cagaagtacgccatggg 555
|||||||| ||||||||
Sbjct: 186 cagaagtatgccatggg 202
>gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H11_O21, mRNA
sequence
Length = 443
Score = 63.9 bits (32), Expect = 2e-010
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 452 aacccagacgaccctcttgtccctgagattgctcacatgtacaagacggatcggcctaag 511
||||| || ||||| || || |||||||| || |||||||||||||| ||| || | |||
Sbjct: 67 aaccctgatgacccgctggtgcctgagatcgcccacatgtacaagactgatagggccaag 126
Query: 512 tacgaggcgacagcccgcagctggacccagaagtacgccatggg 555
|||||| | || || ||| |||||| |||||||||||||||||
Sbjct: 127 tacgagtccactgctcgctcctggacgcagaagtacgccatggg 170
>gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A02_A03, mRNA sequence
Length = 641
Score = 61.9 bits (31), Expect = 9e-010
Identities = 142/179 (79%)
Strand = Plus / Plus
Query: 326 aaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattcttaaggag 385
||||| |||||||||||| | || || || || ||||| || ||||| || | ||||||
Sbjct: 434 aaggtgttccatccaaacgttaacagcaacggcagcatctgccttgatatcttgaaggag 493
Query: 386 cagtggagccctgctttgacaatctctaaggttttgctttctatctgctccctgcttact 445
|||||||| ||||| ||||||| || ||||| | || || ||||||||| | || ||
Sbjct: 494 cagtggagtcctgcactgacaatttcgaaggtgctcctctcaatctgctccttactgacg 553
Query: 446 gatcccaacccagacgaccctcttgtccctgagattgctcacatgtacaagacggatcg 504
|| || ||||| ||||| || || || || |||||||||||||||||||| |||||||
Sbjct: 554 gacccaaaccccgacgatccactggttccggagattgctcacatgtacaaagcggatcg 612
>gb|CN821032.1|CN821032 HRO4422_G06_M12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G06_M12, mRNA
sequence
Length = 329
Score = 61.9 bits (31), Expect = 9e-010
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 522 cagcccgcagctggacccagaagtacgccatgggatgaa 560
|||||||||||||||| ||||||||||||||||| ||||
Sbjct: 1 cagcccgcagctggacgcagaagtacgccatgggttgaa 39
>gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_H05_O09, mRNA sequence
Length = 624
Score = 54.0 bits (27), Expect = 2e-007
Identities = 174/223 (78%)
Strand = Plus / Plus
Query: 258 ttttcttggtgaacattcatttcccgccagactaccccttcaagcctccaaaggtatctt 317
||||||| || ||||| |||||||| || ||||||||||| |||||||| || || ||
Sbjct: 33 ttttctttgtcaacatccatttccctccggactacccctttaagcctcccaaagtgaatt 92
Query: 318 ttaagacgaaggtcttccatccaaacatcaatagtaatggaagcatatgtcttgacattc 377
|| | || ||||| | || ||||||||||| || || ||||| || || ||||| |
Sbjct: 93 ttgaaacaaaggtgtatcacccaaacatcaactccaacggcagcatctgcctggacatcc 152
Query: 378 ttaaggagcagtggagccctgctttgacaatctctaaggttttgctttctatctgctccc 437
| ||||||||||||||||| || |||| || || ||||| | || || ||| ||||||
Sbjct: 153 tcaaggagcagtggagcccggccctgaccatatccaaggtcctcctctccatcagctccc 212
Query: 438 tgcttactgatcccaacccagacgaccctcttgtccctgagat 480
| || || || |||||||| |||||||| || ||||| |||||
Sbjct: 213 ttctcacagaccccaaccccgacgaccccctcgtcccggagat 255
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 532 ctggacccagaagtacgccatggg 555
||||||||||||||||||||||||
Sbjct: 307 ctggacccagaagtacgccatggg 330
>gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D09_G17, mRNA sequence
Length = 564
Score = 48.1 bits (24), Expect = 1e-005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 532 ctggacccagaagtacgccatggg 555
||||||||||||||||||||||||
Sbjct: 230 ctggacccagaagtacgccatggg 253
Score = 44.1 bits (22), Expect = 2e-004
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 371 gacattcttaaggagcagtggagccctgctttgacaatctctaaggttttgctttctatc 430
||||| || ||||||||||||||||| || |||| || || ||||| | || || |||
Sbjct: 69 gacatcctcaaggagcagtggagcccggccctgaccatatccaaggtcctcctctccatc 128
Query: 431 tgctccctgcttactgatcccaacccagacgaccctcttgtccctgagat 480
||||||| || || || |||||||| |||||||| || ||||| |||||
Sbjct: 129 agctcccttctcacagaccccaaccccgacgaccccctcgtcccggagat 178
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2129
Number of Sequences: 8143
Number of extensions: 2129
Number of successful extensions: 621
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 30
length of query: 868
length of database: 4,702,463
effective HSP length: 16
effective length of query: 852
effective length of database: 4,572,175
effective search space: 3895493100
effective search space used: 3895493100
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)