BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716236.2.1
(843 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Aven... 347 1e-095
gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Aven... 220 2e-057
gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Aven... 206 2e-053
gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Aven... 151 1e-036
gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Aven... 133 3e-031
gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Aven... 103 3e-022
gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Aven... 101 1e-021
gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Aven... 94 2e-019
gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Aven... 94 2e-019
gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Aven... 92 1e-018
gb|CN814650.1|CN814650 HRO4501_A06_A11ZS5 Lib AA071E1X Aven... 70 3e-012
gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Aven... 66 5e-011
gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Aven... 66 5e-011
gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Aven... 50 3e-006
gb|CN821032.1|CN821032 HRO4422_G06_M12ZS5 Lib AA069E1X Aven... 46 5e-005
gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Aven... 46 5e-005
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.012
gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Aven... 36 0.049
>gb|CN819537.1|CN819537 HRO4401_C11_E21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_C11_E21, mRNA
sequence
Length = 657
Score = 347 bits (175), Expect = 1e-095
Identities = 313/359 (87%)
Strand = Plus / Minus
Query: 264 ttcatcccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgat 323
|||| |||||||| || ||||| ||||||||||||||||||| ||||||||| | ||| |
Sbjct: 369 ttcaacccatggcgtacttctgcgtccagctgcgggctgttgtctcgtactttgaccggt 310
Query: 324 ccgtcttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaa 383
|||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| || |
Sbjct: 309 ccgtcttgtacatgtgggcaatctcagggacaagggggtcgtccgggttgggatcggtca 250
Query: 384 gcagggagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgctcct 443
||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct: 249 gcagggaacagatagagagcaataccttggagatcgtcaaagcagggctccactgctcct 190
Query: 444 taagaatgtcgagacatatgcttccattactattgatgtttggatggaagaccttcgtct 503
||||||| || || |||||||||||||| || ||||| || |||||||||||||| ||||
Sbjct: 189 taagaatatcaaggcatatgcttccattgctgttgatattaggatggaagacctttgtct 130
Query: 504 taaaagatacctttggaggcttgaaagggtagtccggggggaaatgaatgttcactaaga 563
| ||||||||||| || || ||||| ||||| ||||| || |||||||||||||||||||
Sbjct: 129 tgaaagataccttcgggggtttgaaggggtaatccggaggaaaatgaatgttcactaaga 70
Query: 564 aaacacctccagcatatggactatcaggaggacccatgatggttgcctgccagtggaac 622
|||| ||||| ||||| ||||| ||||| || ||||| || |||| |||||||||||
Sbjct: 69 aaacgcctccggcatagggactgtcagggggtcccataatcgttggaagccagtggaac 11
>gb|CN817480.1|CN817480 HRO4466_C01_F02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C01_F02, mRNA sequence
Length = 510
Score = 220 bits (111), Expect = 2e-057
Identities = 168/187 (89%)
Strand = Plus / Minus
Query: 264 ttcatcccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgat 323
|||| |||||||| || ||||| ||||||||||||||||||| ||||||||| | ||| |
Sbjct: 206 ttcaacccatggcgtacttctgcgtccagctgcgggctgttgtctcgtactttgaccggt 147
Query: 324 ccgtcttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaa 383
|||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| || |
Sbjct: 146 ccgtcttgtacatgtgggcaatctcagggacaagggggtcgtccgggttgggatcggtca 87
Query: 384 gcagggagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgctcct 443
||||||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct: 86 gcagggaacagatagagagcaataccttggagatcgtcaaagcagggctccactgctcct 27
Query: 444 taagaat 450
|||||||
Sbjct: 26 taagaat 20
>gb|CN814697.1|CN814697 HRO4501_E06_I11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_E06_I11, mRNA sequence
Length = 409
Score = 206 bits (104), Expect = 2e-053
Identities = 156/172 (90%), Gaps = 1/172 (0%)
Strand = Plus / Minus
Query: 265 tcatcccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatc 324
||||||||||||||| ||||| ||||||||||||||||| | ||||||||| | ||||||
Sbjct: 180 tcatcccatggcatacttctgcgtccagctgcgggctgtcgtctcgtacttcgaccgatc 121
Query: 325 cgtcttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaag 384
|||||||||||| || || ||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 120 cgtcttgtacatatgggcgatctcagggacaagagggtcgtccgggttggggtcggtaag 61
Query: 385 cagggagcagatagaaagcaaaaccttagagattgtcaaagcagggctccac 436
||| |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 60 cagcgagcagattgaaagcaaaaccttagaga-tgtcaaagcagggctccac 10
Score = 36.2 bits (18), Expect = 0.049
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 91 ggcaatggtaggttgatgttggacta 116
||||||| |||||||||||| |||||
Sbjct: 349 ggcaatgataggttgatgtttgacta 324
>gb|CN820524.1|CN820524 HRO4413_D03_G05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_D03_G05, mRNA
sequence
Length = 393
Score = 151 bits (76), Expect = 1e-036
Identities = 118/132 (89%)
Strand = Plus / Minus
Query: 265 tcatcccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatc 324
||||||||||||||| ||||| ||||||||||||||||| | ||||||||| | ||||||
Sbjct: 147 tcatcccatggcatacttctgcgtccagctgcgggctgtcgtctcgtactttgaccgatc 88
Query: 325 cgtcttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaag 384
|||||||||||| || || ||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 87 cgtcttgtacatatgggcgatctcagggacaagagggtcgtccgggttggggtcggtaag 28
Query: 385 cagggagcagat 396
||| ||||||||
Sbjct: 27 cagcgagcagat 16
>gb|CN821289.1|CN821289 HRO4423_F05_L09ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_F05_L09, mRNA
sequence
Length = 648
Score = 133 bits (67), Expect = 3e-031
Identities = 286/359 (79%)
Strand = Plus / Plus
Query: 269 cccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatccgtc 328
|||||||| || |||||||||||||| | || || | ||||||||| | |||||||
Sbjct: 223 cccatggcgtacttctgggtccagctcctcgcggtagactcgtactttgttcgatccgct 282
Query: 329 ttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaagcagg 388
|||||||||||||||||||| || || || |||||||| ||||| || || || || |||
Sbjct: 283 ttgtacatgtgagcaatctccggaaccagtggatcgtcggggtttgggtccgtcagtagg 342
Query: 389 gagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgctccttaaga 448
|||||||| || || | ||||| |||||||||| ||||| |||||||||||||| |
Sbjct: 343 gagcagattgagaggagcacctttgagattgtcagtgcaggactccactgctccttcaag 402
Query: 449 atgtcgagacatatgcttccattactattgatgtttggatggaagaccttcgtcttaaaa 508
|| || || || ||||| ||||| || || | |||||||||||| ||||| || || |||
Sbjct: 403 atatcaaggcagatgctgccattgctgttaacgtttggatggaacacctttgttttgaaa 462
Query: 509 gatacctttggaggcttgaaagggtagtccggggggaaatgaatgttcactaagaaaaca 568
| ||||| || || ||||| ||||||||||| || |||||||| | || ||||| |||
Sbjct: 463 gcgaccttaggtggtttgaacgggtagtccggaggaaaatgaattgtaaccaagaagaca 522
Query: 569 cctccagcatatggactatcaggaggacccatgatggttgcctgccagtggaacatatc 627
|||||| || || || || | |||||||| || |||||||||||||| ||||||||
Sbjct: 523 cctccactgtaagggctgtctgacggacccataatcgttgcctgccagtgaaacatatc 581
>gb|CN821194.1|CN821194 HRO4428_E09_J18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E09_J18, mRNA
sequence
Length = 592
Score = 103 bits (52), Expect = 3e-022
Identities = 235/296 (79%)
Strand = Plus / Minus
Query: 269 cccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatccgtc 328
|||||||| || ||||| |||||| ||| || || | ||||||||| | || ||| |||
Sbjct: 327 cccatggcgtacttctgcgtccaggagcgagcagtggactcgtacttggccctatcagtc 268
Query: 329 ttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaagcagg 388
||||||||||| || |||||||| || || || || || ||||| || || || ||||
Sbjct: 267 ttgtacatgtgggcgatctcaggcaccagcgggtcatcagggttcgggtccgtcagcaac 208
Query: 389 gagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgctccttaaga 448
|||||||| || || | ||||| || || |||| ||| ||||||||||||||||| |||
Sbjct: 207 gagcagattgacaggaggacctttgatatggtcagagccgggctccactgctccttgaga 148
Query: 449 atgtcgagacatatgcttccattactattgatgtttggatggaagaccttcgtcttaaaa 508
||||| || || ||||| || || || |||||||| || ||||||||||| || |||
Sbjct: 147 atgtcaaggcaaatgctgccgttgctgttgatgttcgggtggaagaccttggtgcggaaa 88
Query: 509 gatacctttggaggcttgaaagggtagtccggggggaaatgaatgttcactaagaa 564
|| ||||| || ||||||||||| || || || || |||||||||||||| |||||
Sbjct: 87 gagaccttcggtggcttgaaaggataatctggtggaaaatgaatgttcaccaagaa 32
>gb|CN816965.1|CN816965 HRO4526_G07_M14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_G07_M14, mRNA sequence
Length = 532
Score = 101 bits (51), Expect = 1e-021
Identities = 210/263 (79%)
Strand = Plus / Minus
Query: 269 cccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatccgtc 328
||||||||||| ||||| |||||| ||| || || | ||||||||| | || ||| |||
Sbjct: 287 cccatggcatacttctgcgtccaggagcgagcagtggactcgtacttggccctatcagtc 228
Query: 329 ttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaagcagg 388
||||||||||| || |||||||| || ||||| || || ||||| || || || ||||
Sbjct: 227 ttgtacatgtgggcgatctcaggcaccagagggtcatcagggttcgggtccgtcagcaac 168
Query: 389 gagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgctccttaaga 448
|||||||| || || | ||||| || || |||| ||| ||||||||||||||||| |||
Sbjct: 167 gagcagattgacaggaggacctttgatatggtcagagccgggctccactgctccttgaga 108
Query: 449 atgtcgagacatatgcttccattactattgatgtttggatggaagaccttcgtcttaaaa 508
||||| || || ||||| || || || |||||||| || ||||||||||| || |||
Sbjct: 107 atgtcaaggcaaatgctgccgttgctgttgatgttcgggtggaagaccttggtgcggaaa 48
Query: 509 gatacctttggaggcttgaaagg 531
|| ||||| || |||||||||||
Sbjct: 47 gagaccttcggtggcttgaaagg 25
>gb|CN820019.1|CN820019 HRO4410_B08_C16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_B08_C16, mRNA
sequence
Length = 560
Score = 93.7 bits (47), Expect = 2e-019
Identities = 158/195 (81%)
Strand = Plus / Minus
Query: 307 ctcgtacttaggccgatccgtcttgtacatgtgagcaatctcagggacaagaggatcgtc 366
||||||||| |||| || |||||||||||||| || ||||| || || ||||| |||||
Sbjct: 247 ctcgtacttgtgccggtctgtcttgtacatgtgggcgatctcgggaaccagagggtcgtc 188
Query: 367 tgggttgggatcagtaagcagggagcagatagaaagcaaaaccttagagattgtcaaagc 426
||||| || || || |||||||||||||| || ||||| ||||| ||||| || | |||
Sbjct: 187 ggggttcgggtctgtcagcagggagcagatggacagcaacaccttggagatggttagagc 128
Query: 427 agggctccactgctccttaagaatgtcgagacatatgcttccattactattgatgtttgg 486
|| ||||| || ||||| || ||||| || || ||||| || || || |||||||||||
Sbjct: 127 gggactccattggtccttcaggatgtccaggcaaatgctcccgttgctgttgatgtttgg 68
Query: 487 atggaagaccttcgt 501
||||| ||||||||
Sbjct: 67 gtggaacaccttcgt 53
>gb|CN820188.1|CN820188 HRO4412_B09_D18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4412_B09_D18, mRNA
sequence
Length = 540
Score = 93.7 bits (47), Expect = 2e-019
Identities = 158/195 (81%)
Strand = Plus / Minus
Query: 307 ctcgtacttaggccgatccgtcttgtacatgtgagcaatctcagggacaagaggatcgtc 366
||||||||| |||| || |||||||||||||| || ||||| || || ||||| |||||
Sbjct: 243 ctcgtacttgtgccggtctgtcttgtacatgtgggcgatctcgggaaccagagggtcgtc 184
Query: 367 tgggttgggatcagtaagcagggagcagatagaaagcaaaaccttagagattgtcaaagc 426
||||| || || || |||||||||||||| || ||||| ||||| ||||| || | |||
Sbjct: 183 ggggttcgggtctgtcagcagggagcagatggacagcaacaccttggagatggttagagc 124
Query: 427 agggctccactgctccttaagaatgtcgagacatatgcttccattactattgatgtttgg 486
|| ||||| || ||||| || ||||| || || ||||| || || || |||||||||||
Sbjct: 123 gggactccattggtccttcaggatgtccaggcaaatgctcccgttgctgttgatgtttgg 64
Query: 487 atggaagaccttcgt 501
||||| ||||||||
Sbjct: 63 gtggaacaccttcgt 49
>gb|CN814992.1|CN814992 HRO4504_F10_L20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_F10_L20, mRNA sequence
Length = 508
Score = 91.7 bits (46), Expect = 1e-018
Identities = 184/230 (80%)
Strand = Plus / Minus
Query: 269 cccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatccgtc 328
||||||||||| ||||| |||||| ||| || || | ||| ||||| | || ||| |||
Sbjct: 249 cccatggcatacttctgcgtccaggagcgagcagtggactcatacttggccctatcagtc 190
Query: 329 ttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaagcagg 388
||||||||||| || |||||||| || ||||| || || ||||| || || || ||||
Sbjct: 189 ttgtacatgtgggcgatctcaggcaccagagggtcatcagggttcgggtccgtcagcaac 130
Query: 389 gagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgctccttaaga 448
|||||||| || || | ||||| || || |||| ||| ||||||||||||||||| |||
Sbjct: 129 gagcagattgacaggaggacctttgatatggtcagagccgggctccactgctccttgaga 70
Query: 449 atgtcgagacatatgcttccattactattgatgtttggatggaagacctt 498
||||| || || ||||| || || || |||||||| || |||||||||||
Sbjct: 69 atgtcaaggcaaatgctgccgttgctgttgatgttcgggtggaagacctt 20
>gb|CN814650.1|CN814650 HRO4501_A06_A11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_A06_A11, mRNA sequence
Length = 245
Score = 69.9 bits (35), Expect = 3e-012
Identities = 92/111 (82%)
Strand = Plus / Minus
Query: 265 tcatcccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatc 324
||||||||||||||| ||||| |||||| |||||||||| | ||| ||||| | ||| ||
Sbjct: 115 tcatcccatggcatacttctgcgtccagatgcgggctgtcgtctcatacttcgaccgctc 56
Query: 325 cgtcttgtacatgtgagcaatctcagggacaagaggatcgtctgggttggg 375
||||||| || | | ||||||||||||||||| ||||| ||||||||
Sbjct: 55 cgtcttggggataaaaacgatctcagggacaagagggtcgtccgggttggg 5
>gb|CN815364.1|CN815364 HRO4508_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_H03_P06, mRNA sequence
Length = 377
Score = 65.9 bits (33), Expect = 5e-011
Identities = 147/185 (79%)
Strand = Plus / Minus
Query: 269 cccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatccgtc 328
||||||||||| ||||| |||||| ||| || || | ||| ||||| | || ||| |||
Sbjct: 202 cccatggcatacttctgcgtccaggagcgagcagtggactcatacttggccctatcagtc 143
Query: 329 ttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatcagtaagcagg 388
||||||||||| || |||||||| || ||||| || || ||||| || || || ||||
Sbjct: 142 ttgtacatgtgggcgatctcaggcaccagagggtcatcagggttcgggtccgtcagcaac 83
Query: 389 gagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgctccttaaga 448
|||||||| || || | ||||| || || |||| ||| |||||||||||||||| |||
Sbjct: 82 gagcagattgacaggaggacctttgatatggtcagagccgggctccactgctcctagaga 23
Query: 449 atgtc 453
|||||
Sbjct: 22 atgtc 18
>gb|CN816098.1|CN816098 HRO4517_A02_A03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A02_A03, mRNA sequence
Length = 641
Score = 65.9 bits (33), Expect = 5e-011
Identities = 102/125 (81%)
Strand = Plus / Minus
Query: 320 cgatccgtcttgtacatgtgagcaatctcagggacaagaggatcgtctgggttgggatca 379
||||||| |||||||||||||||||||| || || || |||||||| ||||| || ||
Sbjct: 612 cgatccgctttgtacatgtgagcaatctccggaaccagtggatcgtcggggtttgggtcc 553
Query: 380 gtaagcagggagcagatagaaagcaaaaccttagagattgtcaaagcagggctccactgc 439
|| || | ||||||||| || || | ||||| || ||||||| ||||| |||||||||
Sbjct: 552 gtcagtaaggagcagattgagaggagcaccttcgaaattgtcagtgcaggactccactgc 493
Query: 440 tcctt 444
|||||
Sbjct: 492 tcctt 488
>gb|CN814731.1|CN814731 HRO4501_H05_O09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_H05_O09, mRNA sequence
Length = 624
Score = 50.1 bits (25), Expect = 3e-006
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 518 ggaggcttgaaagggtagtccggggggaaatgaatgttcactaagaaaa 566
|||||||| || ||||||||||| |||||||| ||||| || |||||||
Sbjct: 81 ggaggcttaaaggggtagtccggagggaaatggatgttgacaaagaaaa 33
>gb|CN821032.1|CN821032 HRO4422_G06_M12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_G06_M12, mRNA
sequence
Length = 329
Score = 46.1 bits (23), Expect = 5e-005
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 264 ttcatcccatggcatatttctgggtccagctgcgggctg 302
|||| |||||||| || ||||| ||||||||||||||||
Sbjct: 39 ttcaacccatggcgtacttctgcgtccagctgcgggctg 1
>gb|CN821493.1|CN821493 HRO4425_H11_O21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4425_H11_O21, mRNA
sequence
Length = 443
Score = 46.1 bits (23), Expect = 5e-005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 269 cccatggcatatttctgggtccagctgcgggctgttgcctcgtacttaggccgatccgtc 328
|||||||| || ||||| |||||| ||| || || | ||||||||| | || ||| |||
Sbjct: 170 cccatggcgtacttctgcgtccaggagcgagcagtggactcgtacttggccctatcagtc 111
Query: 329 ttgtacatgtgagcaatctcagg 351
||||||||||| || ||||||||
Sbjct: 110 ttgtacatgtgggcgatctcagg 88
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.012
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 825 tacctgcccgggcggccgc 843
|||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgc 5
>gb|CN814688.1|CN814688 HRO4501_D09_G17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4501_D09_G17, mRNA sequence
Length = 564
Score = 36.2 bits (18), Expect = 0.049
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 428 gggctccactgctccttaagaatgtc 453
||||||||||||||||| || |||||
Sbjct: 94 gggctccactgctccttgaggatgtc 69
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1849
Number of Sequences: 8143
Number of extensions: 1849
Number of successful extensions: 535
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 29
length of query: 843
length of database: 4,702,463
effective HSP length: 16
effective length of query: 827
effective length of database: 4,572,175
effective search space: 3781188725
effective search space used: 3781188725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)