BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1716233.2.1
         (1153 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN816204.1|CN816204  HRO4518_B02_C04ZS5 Lib AA071E1X Aven...    92   1e-018
gb|CN816470.1|CN816470  HRO4521_A12_A23ZS5 Lib AA071E1X Aven...    40   0.004
gb|CN815246.1|CN815246  HRO4507_E07_J13ZS5 Lib AA071E1X Aven...    34   0.26 

>gb|CN816204.1|CN816204 HRO4518_B02_C04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4518_B02_C04, mRNA sequence
          Length = 687

 Score = 91.7 bits (46), Expect = 1e-018
 Identities = 157/194 (80%)
 Strand = Plus / Plus

                                                                       
Query: 263 ggcttgtgaagtttgaagccgaaaacccttggagtgtattgctgtgacggcttctgcggc 322
           ||||| ||||||||||| || ||||| || ||    |||| ||| ||||||||||| |||
Sbjct: 488 ggcttatgaagtttgaatccaaaaactctggggacatattcctgcgacggcttctggggc 547

                                                                       
Query: 323 ttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatcca 382
           |||||||| | ||| ||||||||  | |  ||||| ||||| ||||||||||| | ||||
Sbjct: 548 ttcaagtgtgggtacgtcatcagatacaagtgaggaaatgttgtcccaaagtaagctcca 607

                                                                       
Query: 383 tcgatgttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatat 442
           |||||||||| ||| || |||||||| |||||||  || |||||||| || || || || 
Sbjct: 608 tcgatgttgctttgatatttggatctcggatagtagagatcttcgcactttgggcagtaa 667

                         
Query: 443 atcttcacagtgct 456
           ||||||||| ||||
Sbjct: 668 atcttcacattgct 681



>gb|CN816470.1|CN816470 HRO4521_A12_A23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4521_A12_A23, mRNA sequence
          Length = 722

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 cacaatagtttacagcgagg 147
           ||||||||||||||||||||
Sbjct: 513 cacaatagtttacagcgagg 494



>gb|CN815246.1|CN815246 HRO4507_E07_J13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
            sativa cDNA clone HRO4507_E07_J13, mRNA sequence
          Length = 441

 Score = 34.2 bits (17), Expect = 0.26
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1038 ctgcgccgccgcagcag 1054
            |||||||||||||||||
Sbjct: 66   ctgcgccgccgcagcag 82



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2690
Number of Sequences: 8143
Number of extensions: 2690
Number of successful extensions: 841
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 4
length of query: 1153
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1137
effective length of database: 4,572,175
effective search space: 5198562975
effective search space used: 5198562975
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)