BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131612.2.1
         (620 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN818093.1|CN818093  HRO4456_F01_K02ZS5 Lib AA070E1X Aven...    70   3e-012
gb|CN818432.1|CN818432  HRO4460_F09_K18ZS5 Lib AA070E1X Aven...    70   3e-012
gb|CN815698.1|CN815698  HRO4514_E08_I16ZS5 Lib AA071E1X Aven...    36   0.036

>gb|CN818093.1|CN818093 HRO4456_F01_K02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4456_F01_K02, mRNA sequence
          Length = 414

 Score = 69.9 bits (35), Expect = 3e-012
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
           ||||| || ||||| ||||||||||||||  ||||||||||||| || || ||||| |||
Sbjct: 23  tggtttcccttcgtctccgagttccagacgcggatgctgttcaatcaagcgttcagtaga 82

                                  
Query: 237 ggtctgcagatctcccgtatcct 259
           || || ||||||||||| |||||
Sbjct: 83  ggacttcagatctcccggatcct 105



>gb|CN818432.1|CN818432 HRO4460_F09_K18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
           Avena sativa cDNA clone HRO4460_F09_K18, mRNA sequence
          Length = 869

 Score = 69.9 bits (35), Expect = 3e-012
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                       
Query: 177 tggttcccgttcgtgtccgagttccagaccaggatgctgttcaaccaggccttcagcaga 236
           ||||| || ||||| ||||||||||||||  | ||||||||||| || || |||||||||
Sbjct: 579 tggtttcccttcgtctccgagttccagacgcgaatgctgttcaatcaagcgttcagcaga 638

                                  
Query: 237 ggtctgcagatctcccgtatcct 259
           || || ||||||||||| |||||
Sbjct: 639 ggacttcagatctcccggatcct 661



>gb|CN815698.1|CN815698 HRO4514_E08_I16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4514_E08_I16, mRNA sequence
          Length = 761

 Score = 36.2 bits (18), Expect = 0.036
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 555 ccaaatgttgaaactata 572
           ||||||||||||||||||
Sbjct: 247 ccaaatgttgaaactata 264



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1182
Number of Sequences: 8143
Number of extensions: 1182
Number of successful extensions: 333
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 330
Number of HSP's gapped (non-prelim): 3
length of query: 620
length of database: 4,702,463
effective HSP length: 16
effective length of query: 604
effective length of database: 4,572,175
effective search space: 2761593700
effective search space used: 2761593700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)