BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131591.2.2
(1252 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815108.1|CN815108 HRO4505_H12_O23ZS5 Lib AA071E1X Aven... 74 3e-013
gb|CN816100.1|CN816100 HRO4517_A04_A07ZS5 Lib AA071E1X Aven... 74 3e-013
gb|CN816796.1|CN816796 HRO4524_H06_P12ZS5 Lib AA071E1X Aven... 74 3e-013
gb|CN818981.1|CN818981 HRO4474_E12_J24ZS5 Lib AA070E1X Aven... 74 3e-013
gb|CN819590.1|CN819590 HRO4401_H08_O15ZS5 Lib AA069E1X Aven... 74 3e-013
gb|CN819697.1|CN819697 HRO4403_B02_D03ZS5 Lib AA069E1X Aven... 74 3e-013
gb|CN820328.1|CN820328 HRO4418_B05_C10ZS5 Lib AA069E1X Aven... 74 3e-013
gb|CN820534.1|CN820534 HRO4413_E03_I05ZS5 Lib AA069E1X Aven... 64 3e-010
gb|CN820580.1|CN820580 HRO4415_A12_B23ZS5 Lib AA069E1X Aven... 64 3e-010
gb|CN820795.1|CN820795 HRO4414_H12_O24ZS5 Lib AA069E1X Aven... 64 3e-010
gb|CN820824.1|CN820824 HRO4420_C09_F18ZS5 Lib AA069E1X Aven... 64 3e-010
gb|CN815899.1|CN815899 HRO4511_G01_N01ZS5 Lib AA071E1X Aven... 40 0.005
gb|CN818080.1|CN818080 HRO4472_A09_A18ZS5 Lib AA070E1X Aven... 40 0.005
gb|CN817326.1|CN817326 HRO4465_B01_D01ZS5 Lib AA070E1X Aven... 34 0.29
gb|CN820743.1|CN820743 HRO4414_B10_C20ZS5 Lib AA069E1X Aven... 34 0.29
>gb|CN815108.1|CN815108 HRO4505_H12_O23ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4505_H12_O23, mRNA sequence
Length = 500
Score = 73.8 bits (37), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 821 gccaaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctc 880
|||||||||| |||||||||||| || || ||||| ||| ||||||||||| |||| |
Sbjct: 117 gccaaggtgaggagcaagatgctctacgcgagctctaactcgaaattcaagactggcttg 176
Query: 881 aatggcattcaggttgaactccaggccacagatgcgagtgaaatcagcctcga 933
|| ||||| ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 177 aacggcatccagattgagatgcaggccaccgatgccagcgaaatcagcctcga 229
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 415 tgaagatttggttctatcatgtaat 439
>gb|CN816100.1|CN816100 HRO4517_A04_A07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A04_A07, mRNA sequence
Length = 718
Score = 73.8 bits (37), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 821 gccaaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctc 880
|||||||||| |||||||||||| || || ||||| ||| ||||||||||| |||| |
Sbjct: 356 gccaaggtgaggagcaagatgctctacgcgagctctaactcgaaattcaagactggcttg 415
Query: 881 aatggcattcaggttgaactccaggccacagatgcgagtgaaatcagcctcga 933
|| ||||| ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 416 aacggcatccagattgagatgcaggccaccgatgccagcgaaatcagcctcga 468
Score = 46.1 bits (23), Expect = 8e-005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 595 cgagctgcagtcgaagaggctgcaccgcttcataactttcaag 637
|||||||||| | |||||||||||||||| | |||||| ||||
Sbjct: 133 cgagctgcaggccaagaggctgcaccgctacgtaacttacaag 175
>gb|CN816796.1|CN816796 HRO4524_H06_P12ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_H06_P12, mRNA sequence
Length = 496
Score = 73.8 bits (37), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 821 gccaaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctc 880
|||||||||| |||||||||||| || || ||||| ||| ||||||||||| |||| |
Sbjct: 66 gccaaggtgaggagcaagatgctctacgcgagctctaactcgaaattcaagactggcttg 125
Query: 881 aatggcattcaggttgaactccaggccacagatgcgagtgaaatcagcctcga 933
|| ||||| ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 126 aacggcatccagattgagatgcaggccaccgatgccagcgaaatcagcctcga 178
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 364 tgaagatttggttctatcatgtaat 388
>gb|CN818981.1|CN818981 HRO4474_E12_J24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_E12_J24, mRNA sequence
Length = 535
Score = 73.8 bits (37), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 821 gccaaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctc 880
|||||||||| |||||||||||| || || ||||| ||| ||||||||||| |||| |
Sbjct: 112 gccaaggtgaggagcaagatgctctacgcgagctctaactcgaaattcaagactggcttg 171
Query: 881 aatggcattcaggttgaactccaggccacagatgcgagtgaaatcagcctcga 933
|| ||||| ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 172 aacggcatccagattgagatgcaggccaccgatgccagcgaaatcagcctcga 224
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 410 tgaagatttggttctatcatgtaat 434
>gb|CN819590.1|CN819590 HRO4401_H08_O15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_H08_O15, mRNA
sequence
Length = 275
Score = 73.8 bits (37), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 821 gccaaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctc 880
|||||||||| |||||||||||| || || ||||| ||| ||||||||||| |||| |
Sbjct: 155 gccaaggtgaggagcaagatgctctacgcgagctctaactcgaaattcaagactggcttg 214
Query: 881 aatggcattcaggttgaactccaggccacagatgcgagtgaaatcagcctcga 933
|| ||||| ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 215 aacggcatccagattgagatgcaggccaccgatgccagcgaaatcagcctcga 267
>gb|CN819697.1|CN819697 HRO4403_B02_D03ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_B02_D03, mRNA
sequence
Length = 403
Score = 73.8 bits (37), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 821 gccaaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctc 880
|||||||||| |||||||||||| || || ||||| ||| ||||||||||| |||| |
Sbjct: 3 gccaaggtgaggagcaagatgctctacgcgagctctaactcgaaattcaagactggcttg 62
Query: 881 aatggcattcaggttgaactccaggccacagatgcgagtgaaatcagcctcga 933
|| ||||| ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 63 aacggcatccagattgagatgcaggccaccgatgccagcgaaatcagcctcga 115
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 301 tgaagatttggttctatcatgtaat 325
>gb|CN820328.1|CN820328 HRO4418_B05_C10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4418_B05_C10, mRNA
sequence
Length = 540
Score = 73.8 bits (37), Expect = 3e-013
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 821 gccaaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctc 880
|||||||||| |||||||||||| || || ||||| ||| ||||||||||| |||| |
Sbjct: 128 gccaaggtgaggagcaagatgctctacgcgagctctaactcgaaattcaagactggcttg 187
Query: 881 aatggcattcaggttgaactccaggccacagatgcgagtgaaatcagcctcga 933
|| ||||| ||| |||| | |||||||| ||||| || ||||||||||||||
Sbjct: 188 aacggcatccagattgagatgcaggccaccgatgccagcgaaatcagcctcga 240
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 426 tgaagatttggttctatcatgtaat 450
>gb|CN820534.1|CN820534 HRO4413_E03_I05ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_E03_I05, mRNA
sequence
Length = 566
Score = 63.9 bits (32), Expect = 3e-010
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 824 aaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctcaat 883
||||||| |||||||||||| || |||||||| |||||||| ||||||| ||| | ||
Sbjct: 149 aaggtgaggagcaagatgctctacgcaagctctaaccagaagttcaagacgggcttgaac 208
Query: 884 ggcattcaggttgaactccaggccacagatgcgagtgaaatcag 927
||||| ||| |||| | |||||||| ||||| || ||||||||
Sbjct: 209 ggcatccagattgagatgcaggccactgatgctagcgaaatcag 252
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 444 tgaagatttggttctatcatgtaat 468
>gb|CN820580.1|CN820580 HRO4415_A12_B23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_A12_B23, mRNA
sequence
Length = 540
Score = 63.9 bits (32), Expect = 3e-010
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 824 aaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctcaat 883
||||||| |||||||||||| || |||||||| |||||||| ||||||| ||| | ||
Sbjct: 129 aaggtgaggagcaagatgctctacgcaagctctaaccagaagttcaagacgggcttgaac 188
Query: 884 ggcattcaggttgaactccaggccacagatgcgagtgaaatcag 927
||||| ||| |||| | |||||||| ||||| || ||||||||
Sbjct: 189 ggcatccagattgagatgcaggccactgatgctagcgaaatcag 232
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 424 tgaagatttggttctatcatgtaat 448
>gb|CN820795.1|CN820795 HRO4414_H12_O24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_H12_O24, mRNA
sequence
Length = 534
Score = 63.9 bits (32), Expect = 3e-010
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 824 aaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctcaat 883
||||||| |||||||||||| || |||||||| |||||||| ||||||| ||| | ||
Sbjct: 129 aaggtgaggagcaagatgctctacgcaagctctaaccagaagttcaagacgggcttgaac 188
Query: 884 ggcattcaggttgaactccaggccacagatgcgagtgaaatcag 927
||||| ||| |||| | |||||||| ||||| || ||||||||
Sbjct: 189 ggcatccagattgagatgcaggccactgatgctagcgaaatcag 232
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 424 tgaagatttggttctatcatgtaat 448
>gb|CN820824.1|CN820824 HRO4420_C09_F18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_C09_F18, mRNA
sequence
Length = 610
Score = 63.9 bits (32), Expect = 3e-010
Identities = 86/104 (82%)
Strand = Plus / Plus
Query: 824 aaggtgaagagcaagatgctttatgcaagctcaaaccagaaattcaagagtggcctcaat 883
||||||| |||||||||||| || |||||||| |||||||| ||||||| ||| | ||
Sbjct: 241 aaggtgaggagcaagatgctctacgcaagctctaaccagaagttcaagacgggcttgaac 300
Query: 884 ggcattcaggttgaactccaggccacagatgcgagtgaaatcag 927
||||| ||| |||| | |||||||| ||||| || ||||||||
Sbjct: 301 ggcatccagattgagatgcaggccactgatgctagcgaaatcag 344
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 536 tgaagatttggttctatcatgtaat 560
>gb|CN815899.1|CN815899 HRO4511_G01_N01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_G01_N01, mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.005
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 902 caggccacagatgcgagtgaaatcagcctcga 933
|||||||| ||||| || ||||||||||||||
Sbjct: 33 caggccaccgatgccagcgaaatcagcctcga 64
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 250 tgaagatttggttctatcatgtaat 274
>gb|CN818080.1|CN818080 HRO4472_A09_A18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4472_A09_A18, mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.005
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 902 caggccacagatgcgagtgaaatcagcctcga 933
|||||||| ||||| || ||||||||||||||
Sbjct: 30 caggccaccgatgccagcgaaatcagcctcga 61
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 247 tgaagatttggttctatcatgtaat 271
>gb|CN817326.1|CN817326 HRO4465_B01_D01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_B01_D01, mRNA sequence
Length = 300
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 186 tgaagatttggttctatcatgtaat 210
>gb|CN820743.1|CN820743 HRO4414_B10_C20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B10_C20, mRNA
sequence
Length = 337
Score = 34.2 bits (17), Expect = 0.29
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1115 tgaaggtttggatctatcatgtaat 1139
||||| ||||| |||||||||||||
Sbjct: 235 tgaagatttggttctatcatgtaat 259
Score = 34.2 bits (17), Expect = 0.29
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 905 gccacagatgcgagtgaaatcagcctcga 933
||||| ||||| || ||||||||||||||
Sbjct: 21 gccaccgatgccagcgaaatcagcctcga 49
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3056
Number of Sequences: 8143
Number of extensions: 3056
Number of successful extensions: 817
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 49
length of query: 1252
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1236
effective length of database: 4,572,175
effective search space: 5651208300
effective search space used: 5651208300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)