BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818166.1|CN818166 HRO4471_C12_E23ZS5 Lib AA070E1X Aven... 182 3e-046
gb|CN818609.1|CN818609 HRO4467_C02_E03ZS5 Lib AA070E1X Aven... 153 3e-037
>gb|CN818166.1|CN818166 HRO4471_C12_E23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_C12_E23, mRNA sequence
Length = 475
Score = 182 bits (92), Expect = 3e-046
Identities = 185/216 (85%)
Strand = Plus / Plus
Query: 280 atcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgatcgccactgt 339
||||| ||||| |||||||||||| | |||||||| || | || ||||||||||||||
Sbjct: 5 atcaactgccggaacaacaagaagttacttggccgcgtgagggcatttgatcgccactgc 64
Query: 340 aacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaagactggcaagggc 399
|||||||| || |||||||| | ||||||||||| ||| | || |||||||| || |||
Sbjct: 65 aacatggttcttgagaacgttagggagatgtggaccgaggttccaaagactgggaaaggc 124
Query: 400 aaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttcctcaggggc 459
|| ||||||||||| |||||||||||||| || |||||||| |||||||||||| | ||
Sbjct: 125 aagaagaaggctcttcctgtgaacaaggacaggttcatcagcaagatgttcctccgcgga 184
Query: 460 gactcggtcatcatagtgctgaggaacccgaagtga 495
|||||||||||||| || ||||||||||||||||||
Sbjct: 185 gactcggtcatcattgttctgaggaacccgaagtga 220
>gb|CN818609.1|CN818609 HRO4467_C02_E03ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4467_C02_E03, mRNA sequence
Length = 463
Score = 153 bits (77), Expect = 3e-037
Identities = 188/225 (83%)
Strand = Plus / Plus
Query: 271 caggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgtgcttttgat 330
||||| || ||||| ||||| |||||||||||| | |||||||| || | || || |||
Sbjct: 5 caggtgcttatcaactgccggaacaacaagaagttacttggccgcgtgagggcattcgat 64
Query: 331 cgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatccccaagact 390
|| ||||| |||||||| || |||||||| | ||||||||||| ||| |||| ||||||
Sbjct: 65 cgtcactgcaacatggttcttgagaacgttagggagatgtggactgaggtcccaaagact 124
Query: 391 ggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagtaagatgttc 450
||||| ||||| ||||||||||| || ||||||||||| || |||||||| |||||||||
Sbjct: 125 ggcaaaggcaagaagaaggctcttccagtgaacaaggacaggttcatcagcaagatgttc 184
Query: 451 ctcaggggcgactcggtcatcatagtgctgaggaacccgaagtga 495
||| | || ||||| |||||||| || || |||||||| ||||||
Sbjct: 185 ctccgcggggactctgtcatcattgtcctcaggaacccaaagtga 229
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1654
Number of Sequences: 8143
Number of extensions: 1654
Number of successful extensions: 474
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 2
length of query: 739
length of database: 4,702,463
effective HSP length: 16
effective length of query: 723
effective length of database: 4,572,175
effective search space: 3305682525
effective search space used: 3305682525
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)