BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.1
(634 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815853.1|CN815853 HRO4511_C01_F01ZS5 Lib AA071E1X Aven... 48 1e-005
gb|CN821537.1|CN821537 HRO4426_D10_G20ZS5 Lib AA069E1X Aven... 40 0.002
gb|CN817742.1|CN817742 HRO4459_A04_A07ZS5 Lib AA070E1X Aven... 38 0.009
gb|CN818988.1|CN818988 HRO4474_E01_J02ZS5 Lib AA070E1X Aven... 38 0.009
gb|CN815008.1|CN815008 HRO4504_H03_P06ZS5 Lib AA071E1X Aven... 34 0.14
gb|CN815125.1|CN815125 HRO4506_B07_C14ZS5 Lib AA071E1X Aven... 34 0.14
gb|CN818099.1|CN818099 HRO4471_H06_O11ZS5 Lib AA070E1X Aven... 34 0.14
gb|CN818274.1|CN818274 HRO4470_C09_F18ZS5 Lib AA070E1X Aven... 34 0.14
gb|CN818377.1|CN818377 HRO4469_D10_H19ZS5 Lib AA070E1X Aven... 34 0.14
gb|CN818515.1|CN818515 HRO4459_F01_K01ZS5 Lib AA070E1X Aven... 34 0.14
gb|CN818793.1|CN818793 HRO4456_C04_E08ZS5 Lib AA070E1X Aven... 34 0.14
gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Aven... 34 0.14
gb|CN821059.1|CN821059 HRO4427_A11_B21ZS5 Lib AA069E1X Aven... 34 0.14
>gb|CN815853.1|CN815853 HRO4511_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root
Avena sativa cDNA clone HRO4511_C01_F01, mRNA sequence
Length = 511
Score = 48.1 bits (24), Expect = 1e-005
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 4 gtgtactcgcgtgtcaccacctcatccttgcgagtgccggcgcctcgcttcttctc 59
||||||||||| || |||||||| |||||||||| ||||| | |||||||||||
Sbjct: 74 gtgtactcgcgggtgaccacctcgtccttgcgagggccgggagcgcgcttcttctc 19
>gb|CN821537.1|CN821537 HRO4426_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D10_G20, mRNA
sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.002
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 483 gtgcctaattcggcacgaggctcg 506
||||| ||||||||||||||||||
Sbjct: 654 gtgccgaattcggcacgaggctcg 631
>gb|CN817742.1|CN817742 HRO4459_A04_A07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_A04_A07, mRNA sequence
Length = 300
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 490 attcggcacgaggctcgtc 508
|||||||||||||||||||
Sbjct: 2 attcggcacgaggctcgtc 20
>gb|CN818988.1|CN818988 HRO4474_E01_J02ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_E01_J02, mRNA sequence
Length = 733
Score = 38.2 bits (19), Expect = 0.009
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 476 ttaccttgtgcctaattcggcacgagg 502
|||||| ||||| ||||||||||||||
Sbjct: 340 ttacctcgtgccgaattcggcacgagg 314
Score = 34.2 bits (17), Expect = 0.14
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 478 accttgtgcctaattcggcacgagg 502
|||| ||||| ||||||||||||||
Sbjct: 313 acctcgtgccgaattcggcacgagg 337
>gb|CN815008.1|CN815008 HRO4504_H03_P06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4504_H03_P06, mRNA sequence
Length = 769
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 490 attcggcacgaggctcg 506
|||||||||||||||||
Sbjct: 1 attcggcacgaggctcg 17
>gb|CN815125.1|CN815125 HRO4506_B07_C14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_B07_C14, mRNA sequence
Length = 608
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 483 gtgcctaattcggcacgaggc 503
||||| |||||||||||||||
Sbjct: 364 gtgccgaattcggcacgaggc 344
>gb|CN818099.1|CN818099 HRO4471_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4471_H06_O11, mRNA sequence
Length = 851
Score = 34.2 bits (17), Expect = 0.14
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 478 accttgtgcctaattcggcacgagg 502
|||| ||||| ||||||||||||||
Sbjct: 444 acctcgtgccgaattcggcacgagg 420
>gb|CN818274.1|CN818274 HRO4470_C09_F18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C09_F18, mRNA sequence
Length = 322
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 493 cggcacgaggctcgtct 509
|||||||||||||||||
Sbjct: 1 cggcacgaggctcgtct 17
>gb|CN818377.1|CN818377 HRO4469_D10_H19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_D10_H19, mRNA sequence
Length = 778
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 483 gtgcctaattcggcacgaggc 503
||||| |||||||||||||||
Sbjct: 30 gtgccgaattcggcacgaggc 10
>gb|CN818515.1|CN818515 HRO4459_F01_K01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_F01_K01, mRNA sequence
Length = 619
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 483 gtgcctaattcggcacgaggc 503
||||| |||||||||||||||
Sbjct: 418 gtgccgaattcggcacgaggc 398
>gb|CN818793.1|CN818793 HRO4456_C04_E08ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_C04_E08, mRNA sequence
Length = 795
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 483 gtgcctaattcggcacgaggc 503
||||| |||||||||||||||
Sbjct: 519 gtgccgaattcggcacgaggc 499
>gb|CN821039.1|CN821039 HRO4422_H02_O04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H02_O04, mRNA
sequence
Length = 700
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 493 cggcacgaggctcgtct 509
|||||||||||||||||
Sbjct: 1 cggcacgaggctcgtct 17
>gb|CN821059.1|CN821059 HRO4427_A11_B21ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_A11_B21, mRNA
sequence
Length = 862
Score = 34.2 bits (17), Expect = 0.14
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 483 gtgcctaattcggcacgaggc 503
||||| |||||||||||||||
Sbjct: 705 gtgccgaattcggcacgaggc 685
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3631
Number of Sequences: 8143
Number of extensions: 3631
Number of successful extensions: 1687
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1666
Number of HSP's gapped (non-prelim): 21
length of query: 634
length of database: 4,702,463
effective HSP length: 16
effective length of query: 618
effective length of database: 4,572,175
effective search space: 2825604150
effective search space used: 2825604150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)