BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.78
(943 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Aven... 135 8e-032
gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Aven... 111 1e-024
gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Aven... 46 6e-005
>gb|CN815174.1|CN815174 HRO4506_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_F11_K22, mRNA sequence
Length = 584
Score = 135 bits (68), Expect = 8e-032
Identities = 95/104 (91%)
Strand = Plus / Minus
Query: 584 gactgggcctcgttgacggtgatgttgcggccgtccagctccttgccgttcatgccctcg 643
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 157 gactgggcctcgttgacggtgatgttgcggccgtcgaggtccttgccgttcatgccctcg 98
Query: 644 atggcgttccgcatcgcctcctccgtggagaaggtgacgaagcc 687
||||||| ||||| | || ||| | ||||||||||||||||||
Sbjct: 97 atggcgtcgcgcatggactgctcagaggagaaggtgacgaagcc 54
Score = 46.1 bits (23), Expect = 6e-005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 361 gggccccaccgctcagttcctccagttcccgtcggagttgccg 403
|||||||||| ||||||||||||||| ||| |||||| ||||
Sbjct: 380 gggccccaccattcagttcctccagtttccgccggagtcgccg 338
>gb|CN816722.1|CN816722 HRO4524_A07_B14ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_A07_B14, mRNA sequence
Length = 491
Score = 111 bits (56), Expect = 1e-024
Identities = 65/68 (95%)
Strand = Plus / Minus
Query: 577 gccgcgggactgggcctcgttgacggtgatgttgcggccgtccagctccttgccgttcat 636
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 68 gccgcgggactgggcctcgttgacggtgatgttgcggccgtcgaggtcctggccgttcat 9
Query: 637 gccctcga 644
||||||||
Sbjct: 8 gccctcga 1
Score = 46.1 bits (23), Expect = 6e-005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 361 gggccccaccgctcagttcctccagttcccgtcggagttgccg 403
|||||||||| ||||||||||||||| ||| |||||| ||||
Sbjct: 269 gggccccaccattcagttcctccagttgccgccggagtcgccg 227
>gb|CN817338.1|CN817338 HRO4465_B10_D19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4465_B10_D19, mRNA sequence
Length = 312
Score = 46.1 bits (23), Expect = 6e-005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 361 gggccccaccgctcagttcctccagttcccgtcggagttgccg 403
|||||||||| ||||||||||||||| ||| |||||| ||||
Sbjct: 95 gggccccaccattcagttcctccagttgccgccggagtcgccg 53
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1521
Number of Sequences: 8143
Number of extensions: 1521
Number of successful extensions: 441
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 6
length of query: 943
length of database: 4,702,463
effective HSP length: 16
effective length of query: 927
effective length of database: 4,572,175
effective search space: 4238406225
effective search space used: 4238406225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)