BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.723
(715 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY083679.1| Avena sativa clone OP10rc receptor kinase ge... 34 0.16
gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene... 34 0.16
gb|CN815567.1|CN815567 HRO4513_B03_C05ZS5 Lib AA071E1X Aven... 30 2.5
gb|CN815671.1|CN815671 HRO4514_C04_E08ZS5 Lib AA071E1X Aven... 30 2.5
gb|CN816992.1|CN816992 HRO4527_A11_B21ZS5 Lib AA071E1X Aven... 30 2.5
gb|CN818402.1|CN818402 HRO4469_C12_F23ZS5 Lib AA070E1X Aven... 30 2.5
gb|CN819634.1|CN819634 HRO4402_D10_G20ZS5 Lib AA069E1X Aven... 30 2.5
gb|CN820468.1|CN820468 HRO4419_G01_N01ZS5 Lib AA069E1X Aven... 30 2.5
gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphospha... 30 2.5
>gb|AY083679.1| Avena sativa clone OP10rc receptor kinase gene cluster, complete
sequence
Length = 12232
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 562 agtttgccatcctaaga 578
|||||||||||||||||
Sbjct: 11702 agtttgccatcctaaga 11718
>gb|AY083681.1| Avena sativa clone OP14 receptor kinase gene cluster, complete sequence
Length = 13990
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 562 agtttgccatcctaaga 578
|||||||||||||||||
Sbjct: 11624 agtttgccatcctaaga 11640
>gb|CN815567.1|CN815567 HRO4513_B03_C05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B03_C05, mRNA sequence
Length = 839
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 581 ttcgacttctacatg 595
|||||||||||||||
Sbjct: 96 ttcgacttctacatg 82
>gb|CN815671.1|CN815671 HRO4514_C04_E08ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_C04_E08, mRNA sequence
Length = 744
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 368 gatggagtcagtgaa 382
|||||||||||||||
Sbjct: 436 gatggagtcagtgaa 450
>gb|CN816992.1|CN816992 HRO4527_A11_B21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_A11_B21, mRNA sequence
Length = 801
Score = 30.2 bits (15), Expect = 2.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 279 ctgatgatgatggcctcat 297
|||||||||||||| ||||
Sbjct: 190 ctgatgatgatggcttcat 208
>gb|CN818402.1|CN818402 HRO4469_C12_F23ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_C12_F23, mRNA sequence
Length = 423
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 tgtcctcgttgttta 266
|||||||||||||||
Sbjct: 324 tgtcctcgttgttta 338
>gb|CN819634.1|CN819634 HRO4402_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D10_G20, mRNA
sequence
Length = 565
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 581 ttcgacttctacatg 595
|||||||||||||||
Sbjct: 162 ttcgacttctacatg 148
>gb|CN820468.1|CN820468 HRO4419_G01_N01ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_G01_N01, mRNA
sequence
Length = 430
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 630 ccacccactatcatg 644
|||||||||||||||
Sbjct: 290 ccacccactatcatg 276
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA,
complete cds; nuclear gene for chloroplast product
Length = 1577
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 252 tgtcctcgttgttta 266
|||||||||||||||
Sbjct: 1353 tgtcctcgttgttta 1367
Database: Avena_nucl_with_EST.fasta
Posted date: May 2, 2006 2:37 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2220
Number of Sequences: 8143
Number of extensions: 2220
Number of successful extensions: 564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 17
length of query: 715
length of database: 4,702,463
effective HSP length: 16
effective length of query: 699
effective length of database: 4,572,175
effective search space: 3195950325
effective search space used: 3195950325
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)