BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.680
(461 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Aven... 188 3e-048
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.007
>gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_D04_H07, mRNA sequence
Length = 654
Score = 188 bits (95), Expect = 3e-048
Identities = 125/135 (92%)
Strand = Plus / Minus
Query: 256 gtacagaccacgataaacaatgattccaacacaggagatgttaaatccacggtaaagccc 315
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 161 gtacagaccacggtagacaatgattccaacacaggagatgttgaatccacggtaaagccc 102
Query: 316 agcaataccatcagacttgagtgtcttgcggtagacatcgacaagcccattgaactgcct 375
|||||||||||| | |||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 101 agcaataccatctgtcttgagagtcttgcggtagacatcaacaaggccattgaactgcct 42
Query: 376 ttcacctcctccctt 390
|||||||| |||||
Sbjct: 41 ctcacctccaccctt 27
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.007
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggta 23
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1194
Number of Sequences: 8143
Number of extensions: 1194
Number of successful extensions: 289
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 2
length of query: 461
length of database: 4,702,463
effective HSP length: 16
effective length of query: 445
effective length of database: 4,572,175
effective search space: 2034617875
effective search space used: 2034617875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)