BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.662
(940 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821190.1|CN821190 HRO4428_E05_J10ZS5 Lib AA069E1X Aven... 408 e-114
gb|CN820758.1|CN820758 HRO4414_D08_G16ZS5 Lib AA069E1X Aven... 127 2e-029
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 40 0.003
>gb|CN821190.1|CN821190 HRO4428_E05_J10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_E05_J10, mRNA
sequence
Length = 811
Score = 408 bits (206), Expect = e-114
Identities = 428/502 (85%)
Strand = Plus / Minus
Query: 355 gttgtcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggca 414
|||||||| ||| |||||||| ||||||||||||||||||| || ||||| ||||||||
Sbjct: 590 gttgtcaggctccttcttcacgggctcttccttctctgacaagataagctcgatgtggca 531
Query: 415 aggggaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgctt 474
|| |||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 530 gggattggacatgtaaggattaatgcgtccatgagcacggtatgtgcgccgcctctgctt 471
Query: 475 ctgggcttggttcacctggatgtgtgaaacatagaggttgtccacgtccaagcctttcac 534
| |||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||
Sbjct: 470 catggcttggttcacctggatgtgtgaaatgtagaggctgtccacatccaagcctttaac 411
Query: 535 atcagcgttactctcagcattcttcagcaaatccaatatgaacctggctgacttaacagg 594
||||| |||||||||||||||||||||||||||| | |||| ||||||||| ||||
Sbjct: 410 ctcagcattactctcagcattcttcagcaaatccagcacgaactgggctgactttgcagg 351
Query: 595 ccagcgaccctgcccattggagtggcgagactttgcttgtgcggtgcgaccaacacctcc 654
|||||||||||| ||||| | ||||| |||||||||||| || || ||||||||||
Sbjct: 350 ccagcgaccctgaccatttggctggcggttctttgcttgtgctgtacggccaacacctct 291
Query: 655 acagtatctccggaagggaattgcctgcttgtgagcaataacatcctcaaggtatcgctt 714
||||| |||| ||||||||| || |||||||| || | ||||||||||||||| | |||
Sbjct: 290 gcagtacctcctgaagggaatagcttgcttgtgggccaaaacatcctcaaggtacctctt 231
Query: 715 agccttggtcaaaggcagcttgcgaagcgcaaaagctgtctcccttgtgttcttgaagtg 774
||||||| ||||||||| ||||||||| ||||| |||||||| | |||||||||||||||
Sbjct: 230 agccttgttcaaaggcatcttgcgaagggcaaacgctgtctcgcgtgtgttcttgaagtg 171
Query: 775 gaccctcaggtcccttcccatggccttggccgatttggtagggttgcccggctcctgcga 834
|||||| || ||| | || |||||||||||| ||||| |||||| ||| ||| |||
Sbjct: 170 gaccctgagatccttgccacaggccttggccgacttggtcgggttggacggatccctcga 111
Query: 835 gtacttaaccatagcggcggcg 856
|||||| ||||| |||||||||
Sbjct: 110 gtacttcaccatggcggcggcg 89
>gb|CN820758.1|CN820758 HRO4414_D08_G16ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_D08_G16, mRNA
sequence
Length = 610
Score = 127 bits (64), Expect = 2e-029
Identities = 121/140 (86%)
Strand = Plus / Minus
Query: 359 tcagcctctttcttcacaggctcttccttctctgacagaatcagctcaatgtggcaaggg 418
||||||||||||||||| |||||||||||||| |||| || ||||| |||||||| |||
Sbjct: 393 tcagcctctttcttcactggctcttccttctcggacaagatgagctcgatgtggcacggg 334
Query: 419 gaggacatgtaagggttaatgcgtccgtgagcacggtaggtgcggcgcctctgcttctgg 478
|||||||| || || |||||||| |||||||||||||| || |||| ||||||||||
Sbjct: 333 ttagacatgtagggattgatgcgtccatgagcacggtaggtccgacgccgctgcttctgg 274
Query: 479 gcttggttcacctggatgtg 498
|| |||||||| ||||||||
Sbjct: 273 gcctggttcacttggatgtg 254
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 tacctgcccgggcggccgct 939
||||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgct 4
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1986
Number of Sequences: 8143
Number of extensions: 1986
Number of successful extensions: 478
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 3
length of query: 940
length of database: 4,702,463
effective HSP length: 16
effective length of query: 924
effective length of database: 4,572,175
effective search space: 4224689700
effective search space used: 4224689700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)