BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.654
(682 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819385.1|CN819385 HRO4405_D04_G07ZS5 Lib AA069E1X Aven... 335 3e-092
gb|CN819555.1|CN819555 HRO4401_E07_I13ZS5 Lib AA069E1X Aven... 210 1e-054
gb|CN821066.1|CN821066 HRO4427_B06_D11ZS5 Lib AA069E1X Aven... 190 1e-048
gb|CN819715.1|CN819715 HRO4403_C08_F15ZS5 Lib AA069E1X Aven... 165 6e-041
gb|CN814880.1|CN814880 HRO4503_E04_J07ZS5 Lib AA071E1X Aven... 133 2e-031
gb|CN820486.1|CN820486 HRO4419_H07_P13ZS5 Lib AA069E1X Aven... 133 2e-031
gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, ... 38 0.010
gb|CN817953.1|CN817953 HRO4453_D01_H01ZS5 Lib AA070E1X Aven... 34 0.16
>gb|CN819385.1|CN819385 HRO4405_D04_G07ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4405_D04_G07, mRNA
sequence
Length = 673
Score = 335 bits (169), Expect = 3e-092
Identities = 310/357 (86%)
Strand = Plus / Minus
Query: 225 actaggcagattccgacttggtgtagatccttacagcaacagccaggcccagtattgcca 284
|||||||||| ||||||||||||||||||| |||||| || || ||||||||||| ||||
Sbjct: 361 actaggcagactccgacttggtgtagatccgtacagcgacggcaaggcccagtatcgcca 302
Query: 285 gggggaccaaaaactggaggatcttgatgacgaactccggggtcttatcctggttgtagt 344
|||||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 301 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 242
Query: 345 gcggctgcttggggggcgtgtacttcaccttactgggtatcgtggccgcatcaatctcac 404
||||||||||||||| ||||| ||| | |||||||||||| || || |||||||
Sbjct: 241 gcggctgcttgggggcaacatacttgaccctggtgggtatcgtggtggcgtcgatctcac 182
Query: 405 cgacgaggtactcgtccatcattgcacgggcggtggtgctgtgccccacatcttcgaaat 464
| || ||||||||||||||| || |||||||| |||||||| |||||||| ||||| |
Sbjct: 181 caacatagtactcgtccatcatcgcccgggcggtcgtgctgtggcccacatcctcgaagt 122
Query: 465 catcggtagcatccttggcagtggaagacagcaggacatcatcacctccagggtggtcct 524
| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct: 121 cgtcggtcgcatccttggcagttgaagacagcaggacatcgtcacctccagggtggtcat 62
Query: 525 ccagaaacttggtcacattgtacaccttgccgccgatgacgagccagcagtcatcct 581
| || |||||||| |||||||||||||| |||||||||| |||||||||||| ||||
Sbjct: 61 cgaggaacttggtgacattgtacacctttccgccgatgatgagccagcagtcgtcct 5
>gb|CN819555.1|CN819555 HRO4401_E07_I13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4401_E07_I13, mRNA
sequence
Length = 504
Score = 210 bits (106), Expect = 1e-054
Identities = 178/202 (88%)
Strand = Plus / Minus
Query: 225 actaggcagattccgacttggtgtagatccttacagcaacagccaggcccagtattgcca 284
|||||||||| ||||||||||||||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 203 actaggcagactccgacttggtgtagatccgtacggcgacagcgaggcccagtatcgcca 144
Query: 285 gggggaccaaaaactggaggatcttgatgacgaactccggggtcttatcctggttgtagt 344
|||||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 143 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 84
Query: 345 gcggctgcttggggggcgtgtacttcaccttactgggtatcgtggccgcatcaatctcac 404
|||||||||||||||||| |||||| ||||| |||||||||||| || || ||||| |
Sbjct: 83 gcggctgcttggggggcgcgtacttgaccttggtgggtatcgtggtggcgtcgatctcgc 24
Query: 405 cgacgaggtactcgtccatcat 426
||||| |||||||||||||||
Sbjct: 23 cgacgtagtactcgtccatcat 2
>gb|CN821066.1|CN821066 HRO4427_B06_D11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_B06_D11, mRNA
sequence
Length = 420
Score = 190 bits (96), Expect = 1e-048
Identities = 147/164 (89%)
Strand = Plus / Minus
Query: 225 actaggcagattccgacttggtgtagatccttacagcaacagccaggcccagtattgcca 284
|||||||||| ||||||||||||||||||| ||| || ||||| ||||||||||| ||||
Sbjct: 174 actaggcagactccgacttggtgtagatccgtacggcgacagcgaggcccagtatcgcca 115
Query: 285 gggggaccaaaaactggaggatcttgatgacgaactccggggtcttatcctggttgtagt 344
|||||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 114 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 55
Query: 345 gcggctgcttggggggcgtgtacttcaccttactgggtatcgtg 388
|||||||||||||||||| |||||| ||||| |||||||||||
Sbjct: 54 gcggctgcttggggggcgcgtacttgaccttggtgggtatcgtg 11
>gb|CN819715.1|CN819715 HRO4403_C08_F15ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4403_C08_F15, mRNA
sequence
Length = 501
Score = 165 bits (83), Expect = 6e-041
Identities = 122/135 (90%)
Strand = Plus / Minus
Query: 225 actaggcagattccgacttggtgtagatccttacagcaacagccaggcccagtattgcca 284
|||||||||| ||||||||||||||||||| |||||| || || ||||||||||| ||||
Sbjct: 166 actaggcagactccgacttggtgtagatccgtacagcgacggcaaggcccagtatcgcca 107
Query: 285 gggggaccaaaaactggaggatcttgatgacgaactccggggtcttatcctggttgtagt 344
|||||| | ||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct: 106 aggggacgaggaactggaggatcttgatgatgaactcgggggtcttgtcctggttgtagt 47
Query: 345 gcggctgcttggggg 359
|||||||||||||||
Sbjct: 46 gcggctgcttggggg 32
>gb|CN814880.1|CN814880 HRO4503_E04_J07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_E04_J07, mRNA sequence
Length = 805
Score = 133 bits (67), Expect = 2e-031
Identities = 118/135 (87%)
Strand = Plus / Minus
Query: 236 tccgacttggtgtagatccttacagcaacagccaggcccagtattgccagggggaccaaa 295
|||||||||||||| ||||| || || || |||||||| || || ||||||||||| |
Sbjct: 665 tccgacttggtgtacatcctaacggctacggccaggccaaggatggccagggggacaagg 606
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgcttg 355
||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 605 aactggaggatcttgatgatgaactcaggggtcttgtcctggttgtagtgcggctgcttc 546
Query: 356 gggggcgtgtacttc 370
|| || |||||||||
Sbjct: 545 ggcggggtgtacttc 531
>gb|CN820486.1|CN820486 HRO4419_H07_P13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4419_H07_P13, mRNA
sequence
Length = 546
Score = 133 bits (67), Expect = 2e-031
Identities = 205/251 (81%)
Strand = Plus / Minus
Query: 236 tccgacttggtgtagatccttacagcaacagccaggcccagtattgccagggggaccaaa 295
|||||||||||||| ||||| || || || |||||||| || || ||||||||||| |
Sbjct: 279 tccgacttggtgtacatcctaacggctacggccaggccaaggatggccagggggacaagg 220
Query: 296 aactggaggatcttgatgacgaactccggggtcttatcctggttgtagtgcggctgcttg 355
||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 219 aactggaggatcttgatgatgaactcaggggtcttgtcctggttgtagtgcggctgcttc 160
Query: 356 gggggcgtgtacttcaccttactgggtatcgtggccgcatcaatctcaccgacgaggtac 415
|| || ||||||||| || | |||||||| | |||||| | ||||| | ||||
Sbjct: 159 ggcggggtgtacttcgtctgggtaggtatcgtcgacgcatccacatcaccaatatagtac 100
Query: 416 tcgtccatcattgcacgggcggtggtgctgtgccccacatcttcgaaatcatcggtagca 475
|| |||| ||| || ||||| || |||||||| || ||||| || || ||||| || |||
Sbjct: 99 tcatccagcatcgcgcgggcagtcgtgctgtggccgacatcctcaaagtcatcagtcgca 40
Query: 476 tccttggcagt 486
|||||||||||
Sbjct: 39 tccttggcagt 29
>gb|AF118559.1|AF118559 Avena fatua puroindoline precursor, mRNA, complete cds
Length = 571
Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 664 tacctgcccgggcggccgc 682
|||||||||||||||||||
Sbjct: 23 tacctgcccgggcggccgc 5
>gb|CN817953.1|CN817953 HRO4453_D01_H01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_D01_H01, mRNA sequence
Length = 552
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 630 acatcctcctcttcctc 646
|||||||||||||||||
Sbjct: 52 acatcctcctcttcctc 36
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1745
Number of Sequences: 8143
Number of extensions: 1745
Number of successful extensions: 513
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 14
length of query: 682
length of database: 4,702,463
effective HSP length: 16
effective length of query: 666
effective length of database: 4,572,175
effective search space: 3045068550
effective search space used: 3045068550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)