BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.569
(1263 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820568.1|CN820568 HRO4413_H07_O13ZS5 Lib AA069E1X Aven... 755 0.0
gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Aven... 424 e-119
gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Aven... 260 3e-069
gb|CN820727.1|CN820727 HRO4416_H10_P20ZS5 Lib AA069E1X Aven... 94 4e-019
gb|CN819204.1|CN819204 HRO4451_D01_G01ZS5 Lib AA070E1X Aven... 40 0.005
gb|CN817549.1|CN817549 HRO4463_G10_M19ZS5 Lib AA070E1X Aven... 34 0.29
>gb|CN820568.1|CN820568 HRO4413_H07_O13ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4413_H07_O13, mRNA
sequence
Length = 839
Score = 755 bits (381), Expect = 0.0
Identities = 705/813 (86%)
Strand = Plus / Minus
Query: 318 gagaatatgaagaaagcacacatcgttgaaaatgaggcagtgtagtatgggtacgctgat 377
||||||||||| ||||| | ||| |||||||| ||||||| |||||||| || |||||
Sbjct: 823 gagaatatgaaaaaagctcccattgttgaaaacgaggcagcatagtatggatatgctgaa 764
Query: 378 gttatgaacctctcatactcgttatgcctgtaagggcgcactggaatctgctttgtaaaa 437
|||||||| || || ||||| ||||||||||| || | ||||||||||||||||| | |
Sbjct: 763 gttatgaatctttcgtactcattatgcctgtatggcctcactggaatctgctttgccaga 704
Query: 438 gacaaaccagtatatcccagcctctggtactcaactttgaactggaaaactccgtagaca 497
|| | |||||| ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct: 703 gaaacaccagtgtatccaagcctctggtactcaactttgaactggaaaactccataaaca 644
Query: 498 tcaggaactttgaaggatgttgagtataaacccttgttgtcattcgacatagttttcaga 557
|| |||||||||||||||||||| || || ||||| |||||| | ||||| ||||||||
Sbjct: 643 tccggaactttgaaggatgttgaatacaagccctttttgtcagttgacatgtttttcaga 584
Query: 558 acataaggactcatcatgaaaaactggagttgcacatcatcagcaacatatggcttccag 617
|||||||||||||||||| ||||||| | ||| |||||||||||||||||||| ||||||
Sbjct: 583 acataaggactcatcatgtaaaactgaatttgaacatcatcagcaacatatggtttccag 524
Query: 618 cttgttccagaccattcatagatctcaacagagtattccaggtcatcgttaatgcggtac 677
||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 523 cttgttccagaccattcatagatctcaaccgagtattccaagtcatcattaatgcggtac 464
Query: 678 atgcctggttcattggtctccccaaccttgtggtgcttaacattaacagccttaaggtgc 737
|||| |||||||| ||||| ||||||||||||||| |||||| || ||||| || ||
Sbjct: 463 atgctaggttcatttgtctctccaaccttgtggtgcacaacattcactgcctttagatgg 404
Query: 738 cccctctcatggaagacccatttgcttgtctctgtcacaaattgctcatttccagctctc 797
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||
Sbjct: 403 cccctctcatggaagacccatttgctcgtctctgtcacgaattgttcatttccagctttc 344
Query: 798 tcgtatctcgttttgctaccagccttttgaacaccagacttcaggaaccggttgctaaaa 857
|| | || | |||||||| ||||| | |||||||||||||||||| |||||||||||
Sbjct: 343 tcatggcttatcttgctacccgccttcttaacaccagacttcaggaagcggttgctaaac 284
Query: 858 agatcaagtgatccagatagcagcacccgagcattatttcttgcctgcataaccgaaacc 917
| ||| || |||||||||| || ||| |||||||||||||||||||||||||| ||||||
Sbjct: 283 aaatccagcgatccagatatcaacacacgagcattatttcttgcctgcataacagaaacc 224
Query: 918 agtgatatagctgacccagtaagcgatggaggcaacgataacttagtctttgggttagct 977
||||||||||||||||| || || |||||||| | | ||||||||||| ||||| |||
Sbjct: 223 agtgatatagctgaccctgtgagagatggaggggatgccaacttagtcttcgggtttgct 164
Query: 978 gagtatgctgatggagaggcagataggactttcagaaccaaactgtttgatggattagcc 1037
|| || |||||||| || ||||| || ||||||| |||||||||||||||||||| |||
Sbjct: 163 gaatacgctgatggggaagcagacagaactttcaaaaccaaactgtttgatggatgagct 104
Query: 1038 gtgtgtccaattccacgaaataatacaggagcctcaatctttttagaccccagtatgaca 1097
| ||||||||||| ||||| |||||||||| |||||||||||| || |||| ||| |||
Sbjct: 103 gcatgtccaattcctcgaaacaatacaggagactcaatctttttggatcccaatatcaca 44
Query: 1098 tctgactgaataagatcatcaccaacaatcaag 1130
|||||||| || |||||||| ||| ||||||||
Sbjct: 43 tctgactgtatcagatcatccccagcaatcaag 11
>gb|CN821003.1|CN821003 HRO4422_D10_G20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D10_G20, mRNA
sequence
Length = 766
Score = 424 bits (214), Expect = e-119
Identities = 391/450 (86%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
||||||||||||| ||| ||| ||||||||||| ||||| | ||| |||||||| |||
Sbjct: 469 tatttgtggtacaagtatgcaaatgagaatatgaaaaaagctcccattgttgaaaacgag 410
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| || ||||| |||||||| || || ||||| ||||||||||| ||
Sbjct: 409 gcagcatagtatggatatgctgaagttatgaatctttcgtactcattatgcctgtatggc 350
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
| ||||||||||||||||| | ||| | |||||| ||||| ||||||||||||||||||
Sbjct: 349 ctcactggaatctgctttgccagagaaacaccagtgtatccaagcctctggtactcaact 290
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||||||| || || |||||
Sbjct: 289 ttgaactggaaaactccataaacatccggaactttgaaggatgttgaatacaagcccttt 230
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| | ||||| |||||||||||||||||||||||||| ||||||| | ||| |||
Sbjct: 229 ttgtcagttgacatgtttttcagaacataaggactcatcatgtaaaactgaatttgaaca 170
Query: 594 tcatcagcaacatatggcttccagcttgttccagaccattcatagatctcaacagagtat 653
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 169 tcatcagcaacatatggtttccagcttgttccagaccattcatagatctcaaccgagtat 110
Query: 654 tccaggtcatcgttaatgcggtacatgcctggttcattggtctccccaaccttgtggtgc 713
|||| |||||| |||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 109 tccaagtcatcattaatgcggtacatgctaggttcatttgtctctccaaccttgtggtgc 50
Query: 714 ttaacattaacagccttaaggtgccccctc 743
|||||| || ||||| || || ||||||
Sbjct: 49 acaacattcactgcctttagatggcccctc 20
>gb|CN820849.1|CN820849 HRO4420_F03_L06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_F03_L06, mRNA
sequence
Length = 577
Score = 260 bits (131), Expect = 3e-069
Identities = 263/307 (85%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
|||||||| |||||||| ||| ||||||||||| || || | ||| |||||||| |||
Sbjct: 307 tatttgtgatacaggtatgcaaatgagaatatgaaaaaggctcccattgttgaaaacgag 248
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| || ||||| |||||||| ||||| ||||| ||||||||||| ||
Sbjct: 247 gcagcatagtatggatatgctgaagttatgaatctctcgtactcattatgcctgtatggc 188
Query: 414 cgcactggaatctgctttgtaaaagacaaaccagtatatcccagcctctggtactcaact 473
| ||||||||||||||||| | ||| | | |||| ||||| ||||||||||||||||||
Sbjct: 187 ctcactggaatctgctttgccagagaaacagcagtgtatccaagcctctggtactcaact 128
Query: 474 ttgaactggaaaactccgtagacatcaggaactttgaaggatgttgagtataaacccttg 533
||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct: 127 ttgaactggaaaactccataaacatctggaactttgaaggatgttgaatataaacccttc 68
Query: 534 ttgtcattcgacatagttttcagaacataaggactcatcatgaaaaactggagttgcaca 593
|||||| | |||||| |||||||||| ||||||||||||||| |||||| | ||| |||
Sbjct: 67 ttgtcagttgacatatttttcagaacgtaaggactcatcatgtaaaactaaatttgaaca 8
Query: 594 tcatcag 600
|||||||
Sbjct: 7 tcatcag 1
>gb|CN820727.1|CN820727 HRO4416_H10_P20ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_H10_P20, mRNA
sequence
Length = 338
Score = 93.7 bits (47), Expect = 4e-019
Identities = 116/139 (83%)
Strand = Plus / Minus
Query: 294 tatttgtggtacaggtacacaagcgagaatatgaagaaagcacacatcgttgaaaatgag 353
||||||||||||| ||| ||| ||||||||||| ||||| | ||| |||||||| |||
Sbjct: 167 tatttgtggtacaagtatgcaaatgagaatatgaaaaaagctcccattgttgaaaacgag 108
Query: 354 gcagtgtagtatgggtacgctgatgttatgaacctctcatactcgttatgcctgtaaggg 413
|||| |||||||| || |||| |||||||| || || ||||| ||||||||||| ||
Sbjct: 107 gcagcatagtatggatatgctggagttatgaatctttcgtactcattatgcctgtatggc 48
Query: 414 cgcactggaatctgctttg 432
| |||||||||||||||||
Sbjct: 47 ctcactggaatctgctttg 29
>gb|CN819204.1|CN819204 HRO4451_D01_G01ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4451_D01_G01, mRNA sequence
Length = 717
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 586 gttgcacatcatcagcaaca 605
||||||||||||||||||||
Sbjct: 392 gttgcacatcatcagcaaca 411
>gb|CN817549.1|CN817549 HRO4463_G10_M19ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4463_G10_M19, mRNA sequence
Length = 742
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 607 atggcttccagcttgtt 623
|||||||||||||||||
Sbjct: 512 atggcttccagcttgtt 496
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3084
Number of Sequences: 8143
Number of extensions: 3084
Number of successful extensions: 727
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 7
length of query: 1263
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1247
effective length of database: 4,572,175
effective search space: 5701502225
effective search space used: 5701502225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)