BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.462
(823 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 436 e-122
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 392 e-109
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 385 e-107
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 379 e-105
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 365 e-101
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 333 1e-091
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 248 7e-066
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 190 1e-048
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 159 5e-039
gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene... 34 0.19
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 436 bits (220), Expect = e-122
Identities = 268/284 (94%)
Strand = Plus / Plus
Query: 246 agaaggccaagaagagcgtggagacctacaagatctacatcttcaaggtgctgaagcagg 305
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 agaaggcgaagaagagcgtcgagacctacaagatctacatcttcaaggtgctgaagcagg 70
Query: 306 tgcaccccgacatcggcatatcctccaaggccatgtccatcatgaactccttcatcaacg 365
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tgcacccggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacg 130
Query: 366 acatctttgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagccca 425
||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 131 acatctttgagaaactcgctggcgaggccgccaagctggcgcgctacaacaagaagccca 190
Query: 426 ccatcacgtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgcca 485
||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct: 191 ccatcacctcccgggagatccagacctccgtccgccttgtcctccccggcgagctcgcca 250
Query: 486 agcacgccgtctccgagggaaccaaggccgtcaccaagttcacc 529
|||||||||| || ||||| ||||||||||||||||||||||||
Sbjct: 251 agcacgccgtgtcagagggcaccaaggccgtcaccaagttcacc 294
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 392 bits (198), Expect = e-109
Identities = 287/316 (90%), Gaps = 3/316 (0%)
Strand = Plus / Plus
Query: 217 caaggagggcggcgag---aagaaggggaagaagaaggccaagaagagcgtggagaccta 273
|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||| ||
Sbjct: 32 caaggagggcggcgaggggaagaagggcaagaagaaagccaagaagagcgtagagacata 91
Query: 274 caagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaa 333
||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct: 92 caagatctacatcttcaaggtcctgaagcaggtgcatcccgacatcggcatctcctccaa 151
Query: 334 ggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggc 393
||||||||||||||||||||||||||||||||||||||| ||||| || || |||||| |
Sbjct: 152 ggccatgtccatcatgaactccttcatcaacgacatcttcgagaaactcgctggcgagtc 211
Query: 394 cgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctc 453
|| ||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 212 ggcaaagcttgcgaggtacaacaagaagcccaccatcacctcccgggagatccagacctc 271
Query: 454 cgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggc 513
||| ||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 272 cgtccgccttgtcctccccggggagctcgccaagcatgccgtgtccgagggcaccaaggc 331
Query: 514 cgtcaccaagttcacc 529
||||| |||||||||
Sbjct: 332 tgtcacgaagttcacc 347
Score = 42.1 bits (21), Expect = 8e-004
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 184 cgagaagcggctgcccgcgtccaag 208
||||||||||||||| |||||||||
Sbjct: 11 cgagaagcggctgccggcgtccaag 35
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 385 bits (194), Expect = e-107
Identities = 283/312 (90%), Gaps = 3/312 (0%)
Strand = Plus / Plus
Query: 217 caaggagggcggcgag---aagaaggggaagaagaaggccaagaagagcgtggagaccta 273
|||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 20 caaggagggcggcgaggggaagaagggcaagaagaaggcgaagaagagcgtcgagaccta 79
Query: 274 caagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatatcctccaa 333
||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||
Sbjct: 80 caagatctacatcttcaaggtcctcaagcaggtgcacccggacatcggcatctcctccaa 139
Query: 334 ggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggccggcgaggc 393
||||||||||||||||||||||||||||||||||||||||||||| || || |||||| |
Sbjct: 140 ggccatgtccatcatgaactccttcatcaacgacatctttgagaaactcgctggcgagtc 199
Query: 394 cgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagatccagacctc 453
|||||||| || || || |||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 200 tgccaagctcgcccgctataacaagaagcccaccatcacctcccgggagatccagacctc 259
Query: 454 cgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgagggaaccaaggc 513
||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||| ||||||||
Sbjct: 260 cgtccgccttgtcctccccggcgagcttgccaagcacgcggtctccgagggcaccaaggc 319
Query: 514 cgtcaccaagtt 525
||||| |||||
Sbjct: 320 tgtcacaaagtt 331
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 379 bits (191), Expect = e-105
Identities = 263/287 (91%)
Strand = Plus / Plus
Query: 242 aagaagaaggccaagaagagcgtggagacctacaagatctacatcttcaaggtgctgaag 301
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 20 aagaagaaggcaaagaagagcgtcgagacctacaagatctacatcttcaaggtgctcaag 79
Query: 302 caggtgcaccccgacatcggcatatcctccaaggccatgtccatcatgaactccttcatc 361
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 caggtgcacccggacatcggcatatcctccaaggccatgtccatcatgaactccttcatt 139
Query: 362 aacgacatctttgagaagctggccggcgaggccgccaagctggcgcggtacaacaagaag 421
|||||||||||||||||||| || || ||| | |||||||| || || ||||||||||||
Sbjct: 140 aacgacatctttgagaagcttgctggggagtctgccaagctcgctcgctacaacaagaag 199
Query: 422 cccaccatcacgtcccgcgagatccagacctccgtgcgcctagtcctccccggagagctc 481
||||||||||| ||||| ||||| |||||||| || ||||| ||||||||||| ||||||
Sbjct: 200 cccaccatcacctcccgggagatacagacctctgtccgcctcgtcctccccggcgagctc 259
Query: 482 gccaagcacgccgtctccgagggaaccaaggccgtcaccaagttcac 528
||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 260 gccaagcacgctgtctctgagggcaccaaggctgtcaccaagttcac 306
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 365 bits (184), Expect = e-101
Identities = 247/268 (92%)
Strand = Plus / Plus
Query: 261 gcgtggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcg 320
|||| ||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct: 11 gcgtcgagacctacaagatctacatcttcaaggtcctcaagcaggtgcacccggacatcg 70
Query: 321 gcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagc 380
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 71 gcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagc 130
Query: 381 tggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcg 440
| || |||||| ||||||||||||| || ||||||||||||||||||||||| ||||| |
Sbjct: 131 tcgctggcgagtccgccaagctggcccgctacaacaagaagcccaccatcacctcccggg 190
Query: 441 agatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccg 500
|||||||||||||||| ||||| |||||||| || ||||||||||||||||| ||||| |
Sbjct: 191 agatccagacctccgtccgcctcgtcctcccaggggagctcgccaagcacgctgtctctg 250
Query: 501 agggaaccaaggccgtcaccaagttcac 528
|||| |||||||||||||| ||||||||
Sbjct: 251 agggcaccaaggccgtcacaaagttcac 278
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 333 bits (168), Expect = 1e-091
Identities = 240/264 (90%)
Strand = Plus / Plus
Query: 265 ggagacctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcat 324
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct: 10 ggagacctacaagatctacatcttcaaggtcctcaagcaggtccaccccgacatcggcat 69
Query: 325 atcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaagctggc 384
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 70 ctcctccaaggccatgtccatcatgaactccttcatcaacgatatctttgagaagctggc 129
Query: 385 cggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgcgagat 444
|||||| | |||||||| ||| ||||||||||||||||||||||||| ||| | |||||
Sbjct: 130 tggcgagtctgccaagctcgcgaggtacaacaagaagcccaccatcacctccagggagat 189
Query: 445 ccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctccgaggg 504
|||||| || || || || || || || || ||||||||||||||||||||||| |||||
Sbjct: 190 ccagacttctgttcgtcttgtgcttccaggggagctcgccaagcacgccgtctctgaggg 249
Query: 505 aaccaaggccgtcaccaagttcac 528
|||||||||||||||||||||||
Sbjct: 250 caccaaggccgtcaccaagttcac 273
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 248 bits (125), Expect = 7e-066
Identities = 188/209 (89%)
Strand = Plus / Plus
Query: 320 ggcatatcctccaaggccatgtccatcatgaactccttcatcaacgacatctttgagaag 379
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 11 ggcatatcctcctaggccatgtccatcatgaactccttcattaacgacatctttgagaag 70
Query: 380 ctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacgtcccgc 439
|| || || ||| | |||||||| || || ||||||||||||||||||||||| |||||
Sbjct: 71 cttgctggggagtctgccaagctcgctcgctacaacaagaagcccaccatcacctcccgg 130
Query: 440 gagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgccgtctcc 499
||||| |||||||| || ||||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 131 gagatacagacctctgtccgcctcgtcctccccggcgagctcgccaagcacgctgtctct 190
Query: 500 gagggaaccaaggccgtcaccaagttcac 528
||||| |||||||| ||||||||||||||
Sbjct: 191 gagggcaccaaggctgtcaccaagttcac 219
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 190 bits (96), Expect = 1e-048
Identities = 141/156 (90%)
Strand = Plus / Plus
Query: 374 gagaagctggccggcgaggccgccaagctggcgcggtacaacaagaagcccaccatcacg 433
|||||| ||||| | ||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct: 12 gagaagttggcctgtgagtccgccaagctcgcgaggtacaacaagaagcccaccatcacc 71
Query: 434 tcccgcgagatccagacctccgtgcgcctagtcctccccggagagctcgccaagcacgcc 493
||| | ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 72 tccagggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgct 131
Query: 494 gtctccgagggaaccaaggccgtcaccaagttcacc 529
||||||||||| |||||||| |||||||||||||||
Sbjct: 132 gtctccgagggcaccaaggctgtcaccaagttcacc 167
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 159 bits (80), Expect = 5e-039
Identities = 107/116 (92%)
Strand = Plus / Plus
Query: 414 acaagaagcccaccatcacgtcccgcgagatccagacctccgtgcgcctagtcctccccg 473
||||||||||||||||||| ||| | ||||||||||||||||| ||||| ||||||||||
Sbjct: 54 acaagaagcccaccatcacctccagggagatccagacctccgtccgcctcgtcctccccg 113
Query: 474 gagagctcgccaagcacgccgtctccgagggaaccaaggccgtcaccaagttcacc 529
| || |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 114 gggaactcgccaagcacgccgtctctgagggcaccaaggccgtcaccaagttcacc 169
>gb|AY083682.1| Avena sativa clone OP45 receptor kinase gene cluster, complete
sequence
Length = 16091
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12 accaaaagcaagaaaac 28
|||||||||||||||||
Sbjct: 9778 accaaaagcaagaaaac 9794
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2168
Number of Sequences: 8143
Number of extensions: 2168
Number of successful extensions: 627
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 13
length of query: 823
length of database: 4,702,463
effective HSP length: 16
effective length of query: 807
effective length of database: 4,572,175
effective search space: 3689745225
effective search space used: 3689745225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)