BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.451
(1101 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821627.1|CN821627 HRO4408_D09_H18ZS5 Lib AA069E1X Aven... 339 3e-093
>gb|CN821627.1|CN821627 HRO4408_D09_H18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D09_H18, mRNA
sequence
Length = 657
Score = 339 bits (171), Expect = 3e-093
Identities = 348/407 (85%)
Strand = Plus / Plus
Query: 407 agccaagacctatctgttatcaacttggtgattgtgaagaagggtgagaatgatctgcct 466
||||| ||||| ||||| |||||| ||||||| || |||||||||||||||||||| |||
Sbjct: 5 agccaggacctctctgtcatcaacctggtgatcgttaagaagggtgagaatgatctccct 64
Query: 467 ggtctgactgacactgagaagccaaggatgaggggtcccaagagggcctccaagatcaga 526
|| |||| ||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 65 ggcttgaccgacaccgagaagcccaggatgaggggacccaagagggcatccaagatcagg 124
Query: 527 aagctgttcaaccttaacaaggatgatgatgtacgcaagtacgtgaacacataccgcagg 586
||| | ||||||||| |||||||||||||| |||||||| || ||||| ||||||||
Sbjct: 125 aagttattcaaccttgctaaggatgatgatgttcgcaagtatgtcaacacttaccgcaga 184
Query: 587 acattcactaccaagaacggcaagaaggtcagcaaggcacctaagatccaacggcttgtg 646
|||||||| | |||||| ||||||||||| ||||| || || |||||||| |||| |||
Sbjct: 185 acattcacgaacaagaagggcaagaaggtgagcaaagctcccaagatccagaggctggtg 244
Query: 647 acacccttgaccctccagaggaagcgtgctagaatcgctgacaagaagaagaggataact 706
|| || ||||||||||||||||| | || ||||| || | |||||| |||||||
Sbjct: 245 actccactgaccctccagaggaagagggcgagaattgcccagaagaagcagaggattgtc 304
Query: 707 aagaagaagtctgaggctgctgagtaccagaagcttcttgcccagaggctgaaggaacag 766
||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct: 305 aagaagaagtctgaggctgctgactaccaaaagctgctcgcccagaggctcaaggagcag 364
Query: 767 agggaccgccggagcgagagcttggccaagaggaggtccaagctttc 813
|||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct: 365 agggaccgccggagcgagagcttggctaagaagaggtccaggctttc 411
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2940
Number of Sequences: 8143
Number of extensions: 2940
Number of successful extensions: 761
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 1
length of query: 1101
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1085
effective length of database: 4,572,175
effective search space: 4960809875
effective search space used: 4960809875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)