BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.448
(911 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821219.1|CN821219 HRO4428_H01_P02ZS5 Lib AA069E1X Aven... 402 e-112
gb|CN816185.1|CN816185 HRO4517_H07_O13ZS5 Lib AA071E1X Aven... 165 9e-041
gb|CN819635.1|CN819635 HRO4402_D11_G22ZS5 Lib AA069E1X Aven... 155 8e-038
gb|CN816615.1|CN816615 HRO4522_H03_O06ZS5 Lib AA071E1X Aven... 34 0.21
gb|CN818273.1|CN818273 HRO4470_C08_F16ZS5 Lib AA070E1X Aven... 34 0.21
>gb|CN821219.1|CN821219 HRO4428_H01_P02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H01_P02, mRNA
sequence
Length = 576
Score = 402 bits (203), Expect = e-112
Identities = 299/331 (90%)
Strand = Plus / Minus
Query: 362 ctcatttcagaggaataaaccgcgaggagtgggtggcaccgataccgggcctgccatgct 421
||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 342 ctcatttgagagggatgaaccgggaggagtgggtggcaccgataccgggcctaccatgct 283
Query: 422 tgaccggcttataggagatggagaactcagcaaggtagtggccgatcatctcaggcttga 481
| || ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 282 tcacaggcttgtaggagatggagaactcagcaaggtaatggccaatcatctcaggcttga 223
Query: 482 tctcaacctggttgaaggtcttgccgttgtagaccccaacaatgcttccaatcatctcag 541
||||||||||||||||||||||||| |||||||| || | || ||| |||||||||||||
Sbjct: 222 tctcaacctggttgaaggtcttgccattgtagacaccgataaggctgccaatcatctcag 163
Query: 542 ggacaatgatcatgttacggagatgtgtcttgactggctctggtttctcaccagcaggag 601
|||||||||||||||| |||||||||||| | || ||||| || |||||||||||||| |
Sbjct: 162 ggacaatgatcatgttgcggagatgtgtcctcacaggctcaggcttctcaccagcagggg 103
Query: 602 catcctttttcgccttgcgcagcttcttgatgagtgccatgggcttcctcttcagacccc 661
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |
Sbjct: 102 catcctttttcgccttgcgcagcttcttgacgagcgccatgggcttcctcttgagacctc 43
Query: 662 tctggaaccttctcctggcgcgcgcggggaa 692
||| ||||||||| | ||| || ||||||||
Sbjct: 42 tcttgaaccttctgcgggcacgggcggggaa 12
>gb|CN816185.1|CN816185 HRO4517_H07_O13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_H07_O13, mRNA sequence
Length = 416
Score = 165 bits (83), Expect = 9e-041
Identities = 155/179 (86%)
Strand = Plus / Minus
Query: 385 gaggagtgggtggcaccgataccgggcctgccatgcttgaccggcttataggagatggag 444
||||||||||||||||| ||||| ||||| || |||||||| ||||| ||||||| ||||
Sbjct: 201 gaggagtgggtggcaccaataccaggccttccgtgcttgactggcttgtaggagagggag 142
Query: 445 aactcagcaaggtagtggccgatcatctcaggcttgatctcaacctggttgaaggtcttg 504
||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||
Sbjct: 141 aactctgccaggtagtggccaatcatctcaggcttgatctcgacggagttgaaggccttg 82
Query: 505 ccgttgtagaccccaacaatgcttccaatcatctcagggacaatgatcatgttacggag 563
|||||||||| || || | |||||||||||||||||| | ||||||||||| |||||
Sbjct: 81 ccgttgtagataccgacgacgcttccaatcatctcaggcatgatgatcatgttgcggag 23
>gb|CN819635.1|CN819635 HRO4402_D11_G22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D11_G22, mRNA
sequence
Length = 354
Score = 155 bits (78), Expect = 8e-038
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 385 gaggagtgggtggcaccgataccgggcctgccatgcttgaccggcttataggagatggag 444
||||||||||||||||| ||||| ||||| || |||||||| ||||| ||||||| ||||
Sbjct: 166 gaggagtgggtggcaccaataccaggccttccgtgcttgactggcttgtaggagagggag 107
Query: 445 aactcagcaaggtagtggccgatcatctcaggcttgatctcaacctggttgaaggtcttg 504
||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||
Sbjct: 106 aactctgccaggtagtggccaatcatctcaggcttgatctcgacggagttgaaggccttg 47
Query: 505 ccgttgtagaccccaacaatgcttccaatcatctcagg 542
|||||||||| || || | ||||||||||||||||||
Sbjct: 46 ccgttgtagataccgacgacgcttccaatcatctcagg 9
>gb|CN816615.1|CN816615 HRO4522_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_H03_O06, mRNA sequence
Length = 788
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 588 ctcaccagcaggagcat 604
|||||||||||||||||
Sbjct: 538 ctcaccagcaggagcat 554
>gb|CN818273.1|CN818273 HRO4470_C08_F16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C08_F16, mRNA sequence
Length = 487
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 802 ggttcgacatcgacgtc 818
|||||||||||||||||
Sbjct: 420 ggttcgacatcgacgtc 436
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2171
Number of Sequences: 8143
Number of extensions: 2171
Number of successful extensions: 627
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 7
length of query: 911
length of database: 4,702,463
effective HSP length: 16
effective length of query: 895
effective length of database: 4,572,175
effective search space: 4092096625
effective search space used: 4092096625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)