BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.444
(1020 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Aven... 143 4e-034
gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Aven... 100 5e-021
gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Aven... 44 2e-004
gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Aven... 44 2e-004
>gb|CN821322.1|CN821322 HRO4424_A05_B10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A05_B10, mRNA
sequence
Length = 457
Score = 143 bits (72), Expect = 4e-034
Identities = 120/136 (88%)
Strand = Plus / Plus
Query: 478 aggtgcacatcggcgacgccaacgtcaagtgctgcccgctcgtgaagggcatcgccgggc 537
||||||||||||||||| ||| |||||||||||| |||||||| ||||| ||||||| |
Sbjct: 1 aggtgcacatcggcgacagcaaggtcaagtgctgctcgctcgtgcagggcgtcgccggcc 60
Query: 538 tctccgcggcggcgtgcctgtgcaccgccatcaaggccaaggtgctggacatttccgtct 597
|| ||||||||| |||||| |||||||||||||||||||||||||| ||| | ||| |||
Sbjct: 61 tcaccgcggcggtgtgcctctgcaccgccatcaaggccaaggtgctcgacctctccctct 120
Query: 598 acgtgcccatcgcgct 613
||||||| |||||||
Sbjct: 121 acgtgccgctcgcgct 136
>gb|CN816756.1|CN816756 HRO4524_D08_H16ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4524_D08_H16, mRNA sequence
Length = 419
Score = 99.6 bits (50), Expect = 5e-021
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 516 ctcgtgaagggcatcgccgggctctccgcggcggcgtgcctgtgcaccgccatcaaggcc 575
|||||| ||||| ||||||| ||| ||||||||| |||||| ||||||||||||||||||
Sbjct: 1 ctcgtgcagggcgtcgccggcctcaccgcggcggtgtgcctctgcaccgccatcaaggcc 60
Query: 576 aaggtgctggacatttccgtctacgtgcccatcgcgct 613
|||||||| ||| | ||| |||||||||| |||||||
Sbjct: 61 aaggtgctcgacctctccctctacgtgccgctcgcgct 98
>gb|CN814748.1|CN814748 HRO4502_A11_A22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_A11_A22, mRNA sequence
Length = 684
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 552 tgcctgtgcaccgccatcaaggccaa 577
||||| ||||||||||||||||||||
Sbjct: 322 tgcctctgcaccgccatcaaggccaa 347
>gb|CN816269.1|CN816269 HRO4518_H01_O02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4518_H01_O02, mRNA sequence
Length = 405
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 552 tgcctgtgcaccgccatcaaggccaa 577
||||| ||||||||||||||||||||
Sbjct: 26 tgcctctgcaccgccatcaaggccaa 51
>gb|CN816526.1|CN816526 HRO4521_G06_M11ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_G06_M11, mRNA sequence
Length = 546
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 552 tgcctgtgcaccgccatcaaggccaa 577
||||| ||||||||||||||||||||
Sbjct: 168 tgcctctgcaccgccatcaaggccaa 193
>gb|CN816803.1|CN816803 HRO4525_A03_A05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_A03_A05, mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 552 tgcctgtgcaccgccatcaaggccaa 577
||||| ||||||||||||||||||||
Sbjct: 16 tgcctctgcaccgccatcaaggccaa 41
>gb|CN817054.1|CN817054 HRO4527_G03_N05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G03_N05, mRNA sequence
Length = 388
Score = 44.1 bits (22), Expect = 2e-004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 552 tgcctgtgcaccgccatcaaggccaa 577
||||| ||||||||||||||||||||
Sbjct: 28 tgcctctgcaccgccatcaaggccaa 53
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1797
Number of Sequences: 8143
Number of extensions: 1797
Number of successful extensions: 494
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 8
length of query: 1020
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1004
effective length of database: 4,572,175
effective search space: 4590463700
effective search space used: 4590463700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)