BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.405
(1589 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Aven... 186 4e-047
gb|CN818696.1|CN818696 HRO4457_F04_L07ZS5 Lib AA070E1X Aven... 42 0.001
gb|AA231926.1|AA231926 CDO1173.F cDNA from oat Avena sativa... 36 0.092
>gb|CN815233.1|CN815233 HRO4507_D04_H07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_D04_H07, mRNA sequence
Length = 654
Score = 186 bits (94), Expect = 4e-047
Identities = 367/458 (80%)
Strand = Plus / Minus
Query: 407 ccgtacttcttgccgaagacaaccacctggagcttgtcgtacccagcaaggacaccagca 466
||||||||||||||||||| | | ||| |||| ||| || |||| ||| |||||||||
Sbjct: 493 ccgtacttcttgccgaagaagaggatctgaagctggtcatagccagaaagcacaccagca 434
Query: 467 ccagctacagcgcggaggatgtttgcgccagcacccttgaagagggacttggtaccctcc 526
||||| | || ||||||||||| || ||||||||||||||||||||||| | |||||||
Sbjct: 433 ccagcaatggcacggaggatgttggcaccagcacccttgaagagggacttagcaccctcc 374
Query: 527 tttgcgacaatctgcttgaaagcgtccaaggagctgttgtacttgacggcctcaccagat 586
|| | ||||||| |||||| || || ||||| |||||||||||||| || |||||
Sbjct: 373 ttcttcaggatctgctggaaagcatcgaatgagctcttgtacttgacggcttctccagag 314
Query: 587 gtcatcatcatgcgacggcgaacagtgtcaatggggtaggaggcaaggccagcaccaatg 646
||||||||||| | | ||| || |||||||||||||| || ||||| || ||||| ||
Sbjct: 313 gtcatcatcatccttctgcggacggtgtcaatggggtaagatgcaagacctgcaccgttg 254
Query: 647 gttataccccacccgagcaagaagctggctaagaagttatcctgcagggtaccaacaaga 706
|| || ||| || || |||||||| |||||||| ||||| || || ||| ||
Sbjct: 253 gtgatcaaccaaccaagagcaaagctggcaaagaagttgtcctggagagtgccagtgagg 194
Query: 707 agcactggcttcagggagtcatacataccaaagtaaagacctcggtacacaatgatcccc 766
|| ||||||||||| || ||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct: 193 agaactggcttcagagaatcatacaatccaaagtacagaccacggtagacaatgattcca 134
Query: 767 acacaagatatattgaatccacggtagaggccacgaataccatcactggcaagggtcttg 826
||||| || || |||||||||||||| || ||| ||||||||| | || ||||||
Sbjct: 133 acacaggagatgttgaatccacggtaaagcccagcaataccatctgtcttgagagtcttg 74
Query: 827 cggtaaacatcaacgagtccattgaactgcctctcacc 864
||||| |||||||| || ||||||||||||||||||||
Sbjct: 73 cggtagacatcaacaaggccattgaactgcctctcacc 36
>gb|CN818696.1|CN818696 HRO4457_F04_L07ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4457_F04_L07, mRNA sequence
Length = 435
Score = 42.1 bits (21), Expect = 0.001
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 407 ccgtacttcttgccgaagacaaccacctggagcttgtcgtacccagcaaggacaccagca 466
||||||||||||||||||| | | ||| |||| ||| || |||| ||| |||||||||
Sbjct: 80 ccgtacttcttgccgaagaagaggatctgaagctggtcatagccagaaagcacaccagca 21
Query: 467 ccagc 471
|||||
Sbjct: 20 ccagc 16
>gb|AA231926.1|AA231926 CDO1173.F cDNA from oat Avena sativa cDNA clone CDO1173, mRNA
sequence
Length = 174
Score = 36.2 bits (18), Expect = 0.092
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 366 tcgtcgtcatcatcatta 383
||||||||||||||||||
Sbjct: 75 tcgtcgtcatcatcatta 92
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3599
Number of Sequences: 8143
Number of extensions: 3599
Number of successful extensions: 1008
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 998
Number of HSP's gapped (non-prelim): 8
length of query: 1589
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1572
effective length of database: 4,564,032
effective search space: 7174658304
effective search space used: 7174658304
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)