BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.334
(1733 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Aven... 785 0.0
gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Aven... 708 0.0
gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Aven... 628 e-180
gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Aven... 620 e-178
gb|CN817141.1|CN817141 HRO4528_F11_L22ZS5 Lib AA071E1X Aven... 478 e-135
gb|CN820836.1|CN820836 HRO4420_D09_H18ZS5 Lib AA069E1X Aven... 406 e-113
gb|CN815879.1|CN815879 HRO4511_E04_J07ZS5 Lib AA071E1X Aven... 398 e-111
gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Aven... 373 e-103
gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Aven... 258 1e-068
gb|CN821000.1|CN821000 HRO4422_D07_G14ZS5 Lib AA069E1X Aven... 157 4e-038
gb|CN821044.1|CN821044 HRO4422_H07_O14ZS5 Lib AA069E1X Aven... 151 2e-036
gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Aven... 64 4e-010
gb|CN817625.1|CN817625 HRO4453_H11_P21ZS5 Lib AA070E1X Aven... 40 0.006
gb|BE439284.1|BE439284 CDO281_WHE04G10F ITEC CDO Oat cDNA L... 36 0.10
gb|CN816104.1|CN816104 HRO4517_A08_A15ZS5 Lib AA071E1X Aven... 34 0.40
gb|CN816480.1|CN816480 HRO4521_C03_E05ZS5 Lib AA071E1X Aven... 34 0.40
gb|CN816508.1|CN816508 HRO4521_E11_I21ZS5 Lib AA071E1X Aven... 34 0.40
gb|CN816891.1|CN816891 HRO4525_H11_O21ZS5 Lib AA071E1X Aven... 34 0.40
gb|CN821271.1|CN821271 HRO4423_D10_H19ZS5 Lib AA069E1X Aven... 34 0.40
gb|CN821388.1|CN821388 HRO4424_G04_N08ZS5 Lib AA069E1X Aven... 34 0.40
>gb|CN817171.1|CN817171 HRO4459_H06_O11ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4459_H06_O11, mRNA sequence
Length = 856
Score = 785 bits (396), Expect = 0.0
Identities = 573/632 (90%)
Strand = Plus / Minus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| ||||||||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 645 gcatcctcctcttccttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 586
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | ||||||||||| || || ||||||||||
Sbjct: 585 tgtttggcccaggtctcttctgcaaatgccttggccaagggagcatcgtcagtgatgaga 526
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaatgccaatgtacttcaag 705
||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct: 525 atgttgtcaaacaaagttcccgacttaacctgccacagctcaattccaatgtacttcagg 466
Query: 706 ctgtcgaaggcgtaaatgtatggatcatccttaaaatctgggttgtcaatcataggtgcc 765
||||| || || || ||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 465 ctgtcaaaagcatagatgtaaggatcatccttgaaatctgggttggcaatcatatgtgcc 406
Query: 766 ttccatttaccctggtagttcgggttcttgattttcttttgtttccatggtcccttgtat 825
|||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 405 ttccatttaccctgatagttagggttcttcattttcttttgcttccatggtcccttgtac 346
Query: 826 tctgggttgggaatggtaggggcagtccattcaccatcttcctcatcgtcccagtcctca 885
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 345 tctgggttgggaatggttggggcagtccattcaccatcttcctcatcatcccagtcctca 286
Query: 886 ggcttcttagcatcagggtcaggaatttccttgggaatatcatcatagccctctggcttc 945
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 285 ggcttcttagcatcagggtcagcaacttccttgggaatatcatcatagccctctggcttc 226
Query: 946 ttgtcctcagggtcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctct 1005
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 225 gtgtcctcagggtcaggaatgtactccttgtcatcccagtcctccggcttcttagcttct 166
Query: 1006 gggtccttgattttcttagggggaagaatatcccagtgctcgtagatgctgccagtttgc 1065
||||||||||||| ||| || |||||||||||||| ||||| |||||||| |||||||||
Sbjct: 165 gggtccttgatttccttgggaggaagaatatcccaatgctcatagatgcttccagtttgc 106
Query: 1066 ttctcttcattatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaa 1125
||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 105 ttctcttcagtatcaatgagaatgctgtacgtagcatcaggacggatgatcaaagtgtac 46
Query: 1126 acatgagtcaactgatcagtctcacaaggcac 1157
||||| | || |||||| ||||| ||||||||
Sbjct: 45 acatgggacagctgatcggtctcgcaaggcac 14
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 788 tcatcctggccatctagagctcatcgtg 761
>gb|CN814754.1|CN814754 HRO4502_B05_C10ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4502_B05_C10, mRNA sequence
Length = 838
Score = 708 bits (357), Expect = 0.0
Identities = 507/557 (91%)
Strand = Plus / Minus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| ||||||||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 567 gcatcctcctcttccttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 508
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | |||||||||||||| || ||||||||||
Sbjct: 507 tgtttggcccaggtctcttctgcaaatgccttggccaaggcagcatcgtcagtgatgaga 448
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaatgccaatgtacttcaag 705
||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct: 447 atgttgtcaaacaaagttcccgacttaacctgccacagctcaattccaatgtacttcagg 388
Query: 706 ctgtcgaaggcgtaaatgtatggatcatccttaaaatctgggttgtcaatcataggtgcc 765
||||| || || || ||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 387 ctgtcaaaagcatagatgtaaggatcatccttgaaatctgggttggcaatcatatgtgcc 328
Query: 766 ttccatttaccctggtagttcgggttcttgattttcttttgtttccatggtcccttgtat 825
|||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 327 ttccatttaccctgatagttagggttcttcattttcttttgcttccatggtcccttgtac 268
Query: 826 tctgggttgggaatggtaggggcagtccattcaccatcttcctcatcgtcccagtcctca 885
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 267 tctgggttgggaatggttggggcagtccattcaccatcttcctcatcatcccagtcctca 208
Query: 886 ggcttcttagcatcagggtcaggaatttccttgggaatatcatcatagccctctggcttc 945
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 207 ggcttcttagcatcagggtcagcaacttccttgggaatatcatcatagccctctggcttc 148
Query: 946 ttgtcctcagggtcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctct 1005
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 147 gtgtcctcagggtcaggaatgtactccttgtcatcccagtcctccggcttcttagcttct 88
Query: 1006 gggtccttgattttcttagggggaagaatatcccagtgctcgtagatgctgccagtttgc 1065
||||||||||||| ||| || |||||||||||||| ||||| |||||||| |||||||||
Sbjct: 87 gggtccttgatttccttgggaggaagaatatcccaatgctcatagatgcttccagtttgc 28
Query: 1066 ttctcttcattatcaat 1082
||||||||| |||||||
Sbjct: 27 ttctcttcagtatcaat 11
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 710 tcatcctggccatctagagctcatcgtg 683
>gb|CN820626.1|CN820626 HRO4415_E12_J23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_E12_J23, mRNA
sequence
Length = 807
Score = 628 bits (317), Expect = e-180
Identities = 449/493 (91%)
Strand = Plus / Plus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| ||||||||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 306 gcatcctcctcttccttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 365
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | |||||||||||||| || ||||||||||
Sbjct: 366 tgtttggcccaggtctcttctgcaaatgccttggccaaggcagcatcgtcagtgatgaga 425
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaatgccaatgtacttcaag 705
||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct: 426 atgttgtcaaacaaagttcccgacttaacctgccacagctcaattccaatgtacttcagg 485
Query: 706 ctgtcgaaggcgtaaatgtatggatcatccttaaaatctgggttgtcaatcataggtgcc 765
||||| || || || ||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 486 ctgtcaaaagcatagatgtaaggatcatccttgaaatctgggttggcaatcatatgtgcc 545
Query: 766 ttccatttaccctggtagttcgggttcttgattttcttttgtttccatggtcccttgtat 825
|||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 546 ttccatttaccctgatagttagggttcttcattttcttttgcttccatggtcccttgtac 605
Query: 826 tctgggttgggaatggtaggggcagtccattcaccatcttcctcatcgtcccagtcctca 885
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 606 tctgggttgggaatggttggggcagtccattcaccatcttcctcatcatcccagtcctca 665
Query: 886 ggcttcttagcatcagggtcaggaatttccttgggaatatcatcatagccctctggcttc 945
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 666 ggcttcttagcatcagggtcagcaacttccttgggaatatcatcatagccctctggcttc 725
Query: 946 ttgtcctcagggtcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctct 1005
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 726 gtgtcctcagggtcaggaatgtactccttgtcatcccagtcctccggcttcttagcttcc 785
Query: 1006 gggtccttgattt 1018
|||||||||||||
Sbjct: 786 gggtccttgattt 798
Score = 40.1 bits (20), Expect = 0.006
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 874 tcccagtcctcaggcttcttagcatcagggtcaggaatttccttggga 921
||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 759 tcccagtcctccggcttcttagcttccgggtccttgatttccttggga 806
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 163 tcatcctggccatctagagctcatcgtg 190
>gb|CN815713.1|CN815713 HRO4514_F11_K22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4514_F11_K22, mRNA sequence
Length = 753
Score = 620 bits (313), Expect = e-178
Identities = 445/489 (91%)
Strand = Plus / Minus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| |||| |||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 499 gcatcctcctcttgcttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 440
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | |||||||||||||| || ||||||||||
Sbjct: 439 tgtttggcccaggtctcttctgcaaatgccttggccaaggcagcatcgtcagtgatgaga 380
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaatgccaatgtacttcaag 705
||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct: 379 atgttgtcaaacaaagttcccgacttaacctgccacagctcaattccaatgtacttcagg 320
Query: 706 ctgtcgaaggcgtaaatgtatggatcatccttaaaatctgggttgtcaatcataggtgcc 765
||||| || || || ||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 319 ctgtcaaaagcatagatgtaaggatcatccttgaaatctgggttggcaatcatatgtgcc 260
Query: 766 ttccatttaccctggtagttcgggttcttgattttcttttgtttccatggtcccttgtat 825
|||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 259 ttccatttaccctgatagttagggttcttcattttcttttgcttccatggtcccttgtac 200
Query: 826 tctgggttgggaatggtaggggcagtccattcaccatcttcctcatcgtcccagtcctca 885
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 199 tctgggttgggaatggttggggcagtccattcaccatcttcctcatcatcccagtcctca 140
Query: 886 ggcttcttagcatcagggtcaggaatttccttgggaatatcatcatagccctctggcttc 945
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 139 ggcttcttagcatcagggtcagcaacttccttgggaatatcatcatagccctctggcttc 80
Query: 946 ttgtcctcagggtcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctct 1005
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 79 gtgtcctcagggtcaggaatgtactccttgtcatcccagtcctccggcttcttagcttct 20
Query: 1006 gggtccttg 1014
|||||||||
Sbjct: 19 gggtccttg 11
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 642 tcatcctggccatctagagctcatcgtg 615
>gb|CN817141.1|CN817141 HRO4528_F11_L22ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_F11_L22, mRNA sequence
Length = 594
Score = 478 bits (241), Expect = e-135
Identities = 490/569 (86%), Gaps = 3/569 (0%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgcaaaagtcttg 618
|||| ||||||||| || || || || | |||| |||||||||| | ||||| ||||||
Sbjct: 594 tcaagagcagccttctcagcatctttatccttggcccaggtctctttggcaaatgtcttg 535
Query: 619 gccaaggcagggtcatcagtgatgatgatgttgtcaaacagagtgcccgatttaacctgc 678
|||||||||| ||||||| ||||| |||||||||| || ||| || | ||| |||||
Sbjct: 534 gccaaggcagcatcatcagggatgagaatgttgtcaatcaaagttcctggcttatcctgc 475
Query: 679 cacagctcaatgccaatgtacttcaagctgtcgaaggcgtaaatgtatggatcatcctta 738
||||||| ||| |||||| |||||| ||||| ||| || || ||||| ||||||||| |
Sbjct: 474 cacagctgaatcccaatgcacttcaggctgtagaaagcatagatgtaaggatcatccgtg 415
Query: 739 aaatctgggttgtcaatcataggtgccttccatttaccctggtag-ttcgggttcttgat 797
| ||||||||| ||||||||| ||||||||||| || ||||| || |||||||||||
Sbjct: 414 aggtctgggttggcaatcatagacgccttccatttcccgaggtagcttggggttcttgat 355
Query: 798 tttcttttgtttccatggtcccttgtattctgggttgggaatggtaggggcagtccattc 857
||||||||| |||| ||||||| || | ||| ||||||||||| || |||||||||||
Sbjct: 354 tttcttttgcttccgcggtccctcgttctatggtttgggaatggttggtgcagtccattc 295
Query: 858 accatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtcaggaatttcctt 917
|||| ||||||||| ||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 294 gccattttcctcatcatcccagtcctcaggcttctgagcatcagggtcagcaacttcctt 235
Query: 918 gggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatgtactccttgtc 977
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 234 gggaatatcatcatagccctccggcttcgtgtcctcagggtcaggaatgtactccttgtc 175
Query: 978 atcccagtcctcaggcttcttagcctctgggtccttgattttcttagggggaagaatatc 1037
|||||||||||| ||||| ||||| |||||||||||||||| ||| || |||||||||||
Sbjct: 174 atcccagtcctctggcttattagcttctgggtccttgatttccttgggaggaagaatatc 115
Query: 1038 ccagtgctcg-tagatgctgcc-agtttgcttctcttcattatcaatgagaatgctgtat 1095
|| |||||| |||||||| || |||||||||||| |||||||||||||||||| ||||
Sbjct: 114 tcaatgctcgatagatgcttcctagtttgcttctcctcattatcaatgagaatgatgtac 55
Query: 1096 gttgcatcaggacggatgatcaaagtgta 1124
|| |||||||| |||||||||||||||||
Sbjct: 54 gtagcatcagggcggatgatcaaagtgta 26
>gb|CN820836.1|CN820836 HRO4420_D09_H18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4420_D09_H18, mRNA
sequence
Length = 602
Score = 406 bits (205), Expect = e-113
Identities = 394/457 (86%)
Strand = Plus / Minus
Query: 542 tctttttctcggcctcatcaaaagcagccttttctgcctccttgtgcttgccccaggtct 601
|||| ||||||||||| ||||| |||||||| || || || || ||||| ||||||||||
Sbjct: 498 tcttcttctcggcctcgtcaaaggcagccttctcagcatctttatgctttccccaggtct 439
Query: 602 cctctgcaaaagtcttggccaaggcagggtcatcagtgatgatgatgttgtcaaacagag 661
|||||||||| ||||||| | |||||||||| ||||| | ||||||||| |||||||
Sbjct: 438 cctctgcaaacttcttggcatactcagggtcatccgtgatcaggatgttgtcgaacagag 379
Query: 662 tgcccgatttaacctgccacagctcaatgccaatgtacttcaagctgtcgaaggcgtaaa 721
| || |||||||||||||||| ||| ||||| |||| |||||||||||| || ||||| |
Sbjct: 378 ttccagatttaacctgccacaactcgatgccgatgtgcttcaagctgtcaaaagcgtaga 319
Query: 722 tgtatggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggt 781
|||| ||||||||||| | ||||||||||| |||| ||| |||||||| || |||| |
Sbjct: 318 tgtaaggatcatccttgtactctgggttgtcgatcaaaggagccttccacttgcccttga 259
Query: 782 agttcgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatgg 841
|||||||||||||||||||||||||| |||||||||||||||| || ||||| |||||||
Sbjct: 258 agttcgggttcttgattttcttttgtgtccatggtcccttgtactcggggtttggaatgg 199
Query: 842 taggggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcag 901
| || || |||||||||||||||||||| || |||||||| ||||||||| | |||||||
Sbjct: 198 ttggagctgtccattcaccatcttcctcctcatcccagtcttcaggcttcgttgcatcag 139
Query: 902 ggtcaggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcag 961
| |||| || ||||||||| || ||||| || ||||||||||||||||||||||| ||||
Sbjct: 138 gatcagtaagttccttggggatgtcatcgtaaccctctggcttcttgtcctcaggatcag 79
Query: 962 gaatgtactccttgtcatcccagtcctcaggcttctt 998
||||||| || ||||| ||||||||||| ||||||||
Sbjct: 78 gaatgtattcgttgtcttcccagtcctctggcttctt 42
Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 874 tcccagtcctcaggcttcttagcatcagg 902
||||||||||| |||||||| ||||||||
Sbjct: 61 tcccagtcctctggcttcttggcatcagg 33
>gb|CN815879.1|CN815879 HRO4511_E04_J07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_E04_J07, mRNA sequence
Length = 779
Score = 398 bits (201), Expect = e-111
Identities = 393/457 (85%)
Strand = Plus / Minus
Query: 542 tctttttctcggcctcatcaaaagcagccttttctgcctccttgtgcttgccccaggtct 601
|||| ||||| ||||| ||||| |||||||| || || || || ||||||||||||||||
Sbjct: 491 tcttcttctcagcctcgtcaaaggcagccttctcagcgtctttatgcttgccccaggtct 432
Query: 602 cctctgcaaaagtcttggccaaggcagggtcatcagtgatgatgatgttgtcaaacagag 661
|||||||||| ||||||| | |||||||||| ||||| | ||||||||| |||||||
Sbjct: 431 cctctgcaaacttcttggcgtactcagggtcatccgtgatcaggatgttgtcgaacagag 372
Query: 662 tgcccgatttaacctgccacagctcaatgccaatgtacttcaagctgtcgaaggcgtaaa 721
| ||||||||||||||||||| ||||||||| |||| |||||||||||| || ||||| |
Sbjct: 371 ttcccgatttaacctgccacaactcaatgccgatgtgcttcaagctgtcaaaagcgtaga 312
Query: 722 tgtatggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggt 781
|||| ||||||||||| | ||||||||||| |||| ||| |||||||| || |||| |
Sbjct: 311 tgtaaggatcatccttgtactctgggttgtcgatcaaaggcgccttccacttgcccttga 252
Query: 782 agttcgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatgg 841
||||||||||||||||||||||||| ||||||| |||||||| || ||||| |||||||
Sbjct: 251 agttcgggttcttgattttcttttgggtccatggccccttgtactccgggtttggaatgg 192
Query: 842 taggggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcag 901
| || || ||||||||||| |||||||| || ||||||||||||||||| | |||||||
Sbjct: 191 ttggagctgtccattcaccgtcttcctcctcatcccagtcctcaggcttggttgcatcag 132
Query: 902 ggtcaggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcag 961
| |||| || ||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct: 131 gatcagtaagctccttgggaatgtcatcataaccctctggcttcttgtcctcaggatcag 72
Query: 962 gaatgtactccttgtcatcccagtcctcaggcttctt 998
||||||| || ||||| |||||||| || ||||||||
Sbjct: 71 gaatgtattcattgtcttcccagtcttctggcttctt 35
>gb|CN815590.1|CN815590 HRO4513_D03_G05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_D03_G05, mRNA sequence
Length = 636
Score = 373 bits (188), Expect = e-103
Identities = 299/336 (88%)
Strand = Plus / Minus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| ||||||||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 346 gcatcctcctcttccttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 287
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | |||||||||||||| || ||||||||||
Sbjct: 286 tgtttggcccaggtctcttctgcaaatgccttggccaaggcagcatcgtcagtgatgaga 227
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaatgccaatgtacttcaag 705
||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct: 226 atgttgtcaaacaaagttcccgacttaacctgccacagctcaattccaatgtacttcagg 167
Query: 706 ctgtcgaaggcgtaaatgtatggatcatccttaaaatctgggttgtcaatcataggtgcc 765
||||| || || || ||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 166 ctgtcaaaagcatagatgtaaggatcatccttgaaatctgggttggcaatcatatgtgcc 107
Query: 766 ttccatttaccctggtagttcgggttcttgattttcttttgtttccatggtcccttgtat 825
|||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct: 106 ttccatttaccctgatagttagggttcttcattttcttttgcttccatggtcccttgtac 47
Query: 826 tctgggttgggaatggtaggggcagtccattcacca 861
||||||||||||||||| ||||||||||||||||||
Sbjct: 46 tctgggttgggaatggttggggcagtccattcacca 11
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 489 tcatcctggccatctagagctcatcgtg 462
>gb|CN817491.1|CN817491 HRO4466_C08_F16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_C08_F16, mRNA sequence
Length = 598
Score = 258 bits (130), Expect = 1e-068
Identities = 238/274 (86%)
Strand = Plus / Minus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| |||| |||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 287 gcatcctcctcttgcttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 228
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | |||||||||||||| || ||||||||||
Sbjct: 227 tgtttggcccaggtctcttctgcaaatgccttggccaaggcagcatcgtcagtgatgaga 168
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaatgccaatgtacttcaag 705
||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||| |
Sbjct: 167 atgttgtcaaacaaagttcccgacttaacctgccacagctcaattccaatgtacttcagg 108
Query: 706 ctgtcgaaggcgtaaatgtatggatcatccttaaaatctgggttgtcaatcataggtgcc 765
||||| || || || ||||| ||||||||||| |||||||||||| |||||||| |||||
Sbjct: 107 ctgtcaaaagcatagatgtaaggatcatccttgaaatctgggttggcaatcatatgtgcc 48
Query: 766 ttccatttaccctggtagttcgggttcttgattt 799
|||||||||||||| ||||| |||| ||| ||||
Sbjct: 47 ttccatttaccctgatagttagggtacttcattt 14
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 430 tcatcctggccatctagagctcatcgtg 403
>gb|CN821000.1|CN821000 HRO4422_D07_G14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_D07_G14, mRNA
sequence
Length = 502
Score = 157 bits (79), Expect = 4e-038
Identities = 148/171 (86%)
Strand = Plus / Minus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| |||| |||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 188 gcatcctcctcttgcttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 129
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | |||||||||||||| || ||||||||||
Sbjct: 128 tgtttggcccaggtctcttctgcaaatgccttggccaaggcagcatcgtcagtgatgaga 69
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaatgccaatg 696
||||||||||||| ||| ||||| |||||||||||||||||||| ||||||
Sbjct: 68 atgttgtcaaacaaagttcccgacttaacctgccacagctcaattccaatg 18
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 331 tcatcctggccatctagagctcatcgtg 304
>gb|CN821044.1|CN821044 HRO4422_H07_O14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_H07_O14, mRNA
sequence
Length = 502
Score = 151 bits (76), Expect = 2e-036
Identities = 142/164 (86%)
Strand = Plus / Minus
Query: 526 gcatcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttg 585
|||||||| |||| |||||||||||| ||||| |||||||||||||| || | |||||
Sbjct: 187 gcatcctcctcttgcttctttttctcagcctcgtcaaaagcagccttctcaacatcctta 128
Query: 586 tgcttgccccaggtctcctctgcaaaagtcttggccaaggcagggtcatcagtgatgatg 645
|| ||| |||||||||| |||||||| | |||||||||||||| || ||||||||||
Sbjct: 127 tgtttggcccaggtctcttctgcaaatgccttggccaaggcagcatcgtcagtgatgaga 68
Query: 646 atgttgtcaaacagagtgcccgatttaacctgccacagctcaat 689
||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct: 67 atgttgtcaaacaaagttcccgacttaacctgccacagctcaat 24
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 330 tcatcctggccatctagagctcatcgtg 303
>gb|CN818391.1|CN818391 HRO4469_D07_H13ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4469_D07_H13, mRNA sequence
Length = 735
Score = 63.9 bits (32), Expect = 4e-010
Identities = 83/100 (83%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
||||||||||| ||| ||||| || |||||| || | |||||||||||||| ||||||
Sbjct: 251 tggatcatcctcaaactctggattatcaatccatggggtcttccatttacccttgtagtt 192
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtat 825
|||||||| |||||||| | ||||||| ||| ||||||
Sbjct: 191 agggttcttaattttcttgcgcttccatgttcctttgtat 152
Score = 34.2 bits (17), Expect = 0.40
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 901 gggtcaggaatttccttgggaatatcatcatagccctctgg 941
||||||||||| || | |||||| |||||||||||||||
Sbjct: 76 gggtcaggaatctctctcggaatagaatcatagccctctgg 36
>gb|CN817625.1|CN817625 HRO4453_H11_P21ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4453_H11_P21, mRNA sequence
Length = 363
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 380 tcatcctcgccatctagagctcgtcgtg 407
||||||| |||||||||||||| |||||
Sbjct: 178 tcatcctggccatctagagctcatcgtg 151
>gb|BE439284.1|BE439284 CDO281_WHE04G10F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO281_WHE04G10, mRNA sequence
Length = 324
Score = 36.2 bits (18), Expect = 0.10
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 275 gtccatctgcttattagc 292
||||||||||||||||||
Sbjct: 286 gtccatctgcttattagc 303
>gb|CN816104.1|CN816104 HRO4517_A08_A15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_A08_A15, mRNA sequence
Length = 523
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 377 acatcatcctcgccatc 393
|||||||||||||||||
Sbjct: 57 acatcatcctcgccatc 73
>gb|CN816480.1|CN816480 HRO4521_C03_E05ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_C03_E05, mRNA sequence
Length = 464
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 377 acatcatcctcgccatc 393
|||||||||||||||||
Sbjct: 23 acatcatcctcgccatc 39
>gb|CN816508.1|CN816508 HRO4521_E11_I21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4521_E11_I21, mRNA sequence
Length = 791
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1151 aaggcacatccttcttg 1167
|||||||||||||||||
Sbjct: 160 aaggcacatccttcttg 176
>gb|CN816891.1|CN816891 HRO4525_H11_O21ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_H11_O21, mRNA sequence
Length = 884
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1151 aaggcacatccttcttg 1167
|||||||||||||||||
Sbjct: 160 aaggcacatccttcttg 176
>gb|CN821271.1|CN821271 HRO4423_D10_H19ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4423_D10_H19, mRNA
sequence
Length = 450
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 377 acatcatcctcgccatc 393
|||||||||||||||||
Sbjct: 114 acatcatcctcgccatc 130
>gb|CN821388.1|CN821388 HRO4424_G04_N08ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_G04_N08, mRNA
sequence
Length = 428
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 377 acatcatcctcgccatc 393
|||||||||||||||||
Sbjct: 26 acatcatcctcgccatc 42
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5271
Number of Sequences: 8143
Number of extensions: 5271
Number of successful extensions: 1459
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1354
Number of HSP's gapped (non-prelim): 81
length of query: 1733
length of database: 4,702,463
effective HSP length: 17
effective length of query: 1716
effective length of database: 4,564,032
effective search space: 7831878912
effective search space used: 7831878912
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)