BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.226
(818 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Aven... 396 e-110
gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Aven... 396 e-110
gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Aven... 392 e-109
gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Aven... 385 e-107
gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Aven... 381 e-106
gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Aven... 305 3e-083
gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Aven... 260 2e-069
gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Aven... 184 8e-047
gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Aven... 182 3e-046
gb|CN814889.1|CN814889 HRO4503_F02_L03ZS5 Lib AA071E1X Aven... 36 0.047
gb|BE439127.1|BE439127 CDO250_WHE2D0092F ITEC CDO Oat cDNA ... 34 0.19
gb|CN816913.1|CN816913 HRO4526_B09_C18ZS5 Lib AA071E1X Aven... 34 0.19
>gb|CN815219.1|CN815219 HRO4507_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4507_C01_F01, mRNA sequence
Length = 365
Score = 396 bits (200), Expect = e-110
Identities = 287/316 (90%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || || ||||| ||||| ||||| ||||| || ||||| ||||||||||| ||
Sbjct: 344 ctaagaggatgtaaactttgtgacagccttggtgccctcggagaccgcgtgcttggcaag 285
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 284 ctcgccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 225
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||| ||||||||||||||||| | ||| | ||||| ||||| ||||||||||||||
Sbjct: 224 cttgttatagcgggcgagcttggcagactcgccagcgagtttctcaaagatgtcgttgat 165
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 164 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 105
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 104 gaggaccttgaagatgtagatcttgtaggtctcgacgctcttcttcgccttcttcttgcc 45
Query: 575 cttcttgccctcgccg 590
|||||| |||||||||
Sbjct: 44 cttcttcccctcgccg 29
>gb|CN821624.1|CN821624 HRO4408_D06_H12ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4408_D06_H12, mRNA
sequence
Length = 415
Score = 396 bits (200), Expect = e-110
Identities = 275/300 (91%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 316 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 257
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 256 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 197
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| ||||||||||| | |||| | || |||||||| ||||||||||| ||
Sbjct: 196 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 137
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 136 gaaggagttcatgatggacatggccttggaggatatgccgatgtccgggtgcacctgctt 77
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct: 76 gagcaccttgaagatgtagatcttgtaggtctcgacgctcttctttgccttcttcttgcc 17
>gb|CN817060.1|CN817060 HRO4527_G09_N17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4527_G09_N17, mRNA sequence
Length = 412
Score = 392 bits (198), Expect = e-109
Identities = 264/286 (92%)
Strand = Plus / Minus
Query: 274 tctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcga 333
|||| ||||| |||||||||||||| ||||| ||||| || || ||||||||||||||||
Sbjct: 304 tctacgacgaggtgaacttggtgacggccttggtgccctctgacacggcgtgcttggcga 245
Query: 334 gctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggct 393
|||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 244 gctcgccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggct 185
Query: 394 tcttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttga 453
||||||||||||| || |||||||||||||| | ||||| ||||| |||||||||||||
Sbjct: 184 tcttgttgtagcgcgccagcttggcggcctcgccagcgagtttctcaaagatgtcgttga 125
Query: 454 tgaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgct 513
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 124 tgaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgct 65
Query: 514 tgagcaccttgaagatgtagatcttgtaggtctccacgctcttctt 559
| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 64 tcagcaccttgaagatgtagatcttgtaggtctcgacgctcttctt 19
>gb|CN820741.1|CN820741 HRO4414_B07_C14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4414_B07_C14, mRNA
sequence
Length = 454
Score = 385 bits (194), Expect = e-107
Identities = 257/278 (92%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||| ||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 288 ctaagaggatgtgaactttgtgacggccttggtgccctcagagacagcgtgcttggcgag 229
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||| || || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 228 ctcccctgggaggacgaggcggacggaggtctggatctcccgggaggtgatggtgggctt 169
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 168 cttgttgtagcgggccagcttggcggactcgccagcgagcttctcgaagatgtcgttgat 109
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 108 gaaggagttcatgatggacatggccttggaggagatgccgatgtccgggtgcacctgctt 49
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgc 552
||| ||||||||||||||||||||||||||||| ||||
Sbjct: 48 gaggaccttgaagatgtagatcttgtaggtctcgacgc 11
>gb|CN815929.1|CN815929 HRO4515_A08_B15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_A08_B15, mRNA sequence
Length = 655
Score = 381 bits (192), Expect = e-106
Identities = 285/316 (90%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
||||||||| |||||||| ||||| ||||| ||||| || || ||||| |||||||||||
Sbjct: 356 ctaagacgaggtgaacttcgtgacagccttggtgccctcggacacggcatgcttggcgag 297
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 296 ctccccggggaggacaaggcggacggaggtctggatctcccgggaggtgatggtgggctt 237
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
||||||||| | || ||||| || | ||| | ||||| ||||||||||||||||||||
Sbjct: 236 cttgttgtacctcgcaagctttgccgactcgccagcgagtttctcgaagatgtcgttgat 177
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 176 gaaggagttcatgatggacatggccttggaggagatgccgatgtcgggatgcacctgctt 117
Query: 515 gagcaccttgaagatgtagatcttgtaggtctccacgctcttcttggctttcttcttgcc 574
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 116 caggaccttgaagatgtagatcttgtatgtctctacgctcttcttggctttcttcttgcc 57
Query: 575 cttcttgccctcgccg 590
|||||| |||||||||
Sbjct: 56 cttcttcccctcgccg 41
>gb|CN816090.1|CN816090 HRO4516_H02_P04ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4516_H02_P04, mRNA sequence
Length = 472
Score = 305 bits (154), Expect = 3e-083
Identities = 244/274 (89%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 283 ctaagaggaagtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 224
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||| || || || || || || || || ||||||||||| | ||||||||||||||||||
Sbjct: 223 ctcccctggaagcacaagacgaacagaagtctggatctccctggaggtgatggtgggctt 164
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
||||||||| | ||||||||||| | ||| | || |||||||| ||||| ||||||||
Sbjct: 163 cttgttgtacctcgcgagcttggcagactcgccagccagcttctcaaagatatcgttgat 104
Query: 455 gaaggaattcatgatggacatggccttggacgagatgccgatgtcggggtgcacctgctt 514
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 103 gaaggagttcatgatggacatggccttggaggagatgccgatgtcggggtggacctgctt 44
Query: 515 gagcaccttgaagatgtagatcttgtaggtctcc 548
||| ||||||||||||||||||||||||||||||
Sbjct: 43 gaggaccttgaagatgtagatcttgtaggtctcc 10
>gb|CN817108.1|CN817108 HRO4528_C10_F20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_C10_F20, mRNA sequence
Length = 360
Score = 260 bits (131), Expect = 2e-069
Identities = 197/219 (89%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 229 ctaagaggatgtgaacttggtgacagccttggtgccctcagagacagcgtgcttggcgag 170
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 169 ctcgccggggaggacgaggcggacagaggtctgtatctcccgggaggtgatggtgggctt 110
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgat 454
|||||||||||| ||||||||||| | |||| | || |||||||| ||||||||||| ||
Sbjct: 109 cttgttgtagcgagcgagcttggcagactccccagcaagcttctcaaagatgtcgttaat 50
Query: 455 gaaggaattcatgatggacatggccttggacgagatgcc 493
|||||| ||||||||||||||||||| ||| || |||||
Sbjct: 49 gaaggagttcatgatggacatggcctaggaggatatgcc 11
>gb|CN816143.1|CN816143 HRO4517_E01_I01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_E01_I01, mRNA sequence
Length = 384
Score = 184 bits (93), Expect = 8e-047
Identities = 151/169 (89%), Gaps = 1/169 (0%)
Strand = Plus / Minus
Query: 275 ctaagacgaagtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgag 334
|||||| || |||||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct: 178 ctaagaggaggtgaacttggtgacggccttggtgccctcagagacggcgtgcttggcgag 119
Query: 335 ctcgccgggtaggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggctt 394
|| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 118 ttccccggggaggacgaggcggacggaggtctggatctccctggaggtgatggtgggctt 59
Query: 395 cttgttgtagcgggcgagcttggcggcctccgcggcgagcttctcgaag 443
|||| | |||||||||||||||||| |||| ||| || |||||||||
Sbjct: 58 cttg-taaagcgggcgagcttggcggactccccggaaagtttctcgaag 11
>gb|CN815430.1|CN815430 HRO4509_F01_K01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_F01_K01, mRNA sequence
Length = 361
Score = 182 bits (92), Expect = 3e-046
Identities = 125/136 (91%)
Strand = Plus / Minus
Query: 285 gtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccgggt 344
|||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct: 166 gtgaacttggtgacagccttggtgccctcggagacagcgtgcttggcgagctcgccgggg 107
Query: 345 aggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgtag 404
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 106 aggacgaggcggacggaggtctggatctccctggaggtgatggtgggcttcttgttgtac 47
Query: 405 cgggcgagcttggcgg 420
| |||||||||||||
Sbjct: 46 ctcgcgagcttggcgg 31
>gb|CN814889.1|CN814889 HRO4503_F02_L03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_F02_L03, mRNA sequence
Length = 232
Score = 36.2 bits (18), Expect = 0.047
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 647 agccttctccgccttctc 664
||||||||||||||||||
Sbjct: 61 agccttctccgccttctc 44
>gb|BE439127.1|BE439127 CDO250_WHE2D0092F ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO250_WHE2D0092, mRNA sequence
Length = 323
Score = 34.2 bits (17), Expect = 0.19
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 238 ccagacaccagtacaaa 254
|||||||||||||||||
Sbjct: 295 ccagacaccagtacaaa 311
>gb|CN816913.1|CN816913 HRO4526_B09_C18ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4526_B09_C18, mRNA sequence
Length = 859
Score = 34.2 bits (17), Expect = 0.19
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 553 tcttcttggctttcttcttgc 573
|||||||| ||||||||||||
Sbjct: 285 tcttcttgtctttcttcttgc 265
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2106
Number of Sequences: 8143
Number of extensions: 2106
Number of successful extensions: 625
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 20
length of query: 818
length of database: 4,702,463
effective HSP length: 16
effective length of query: 802
effective length of database: 4,572,175
effective search space: 3666884350
effective search space used: 3666884350
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)