BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.202
(3202 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Aven... 141 4e-033
>gb|CN815444.1|CN815444 HRO4509_G04_M07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4509_G04_M07, mRNA sequence
Length = 630
Score = 141 bits (71), Expect = 4e-033
Identities = 122/139 (87%)
Strand = Plus / Minus
Query: 579 tgcggtacttgagcgcgtacagcatctccaggtaccgccgggtctcgcgcctctccaggt 638
|||||||||| || ||||| | |||||||||||| || || ||||| |||||||||||||
Sbjct: 297 tgcggtacttcagagcgtagaacatctccaggtagcggcgagtctcacgcctctccaggt 238
Query: 639 tggacacgtacttccagaacccgtacacgccggtgagggtcatcagcctctccgagtaca 698
| |||||| |||||||| || || || ||||| |||||||||||||||||||||||||
Sbjct: 237 tactcacgtatttccagaatccatatacaccggtcagggtcatcagcctctccgagtaca 178
Query: 699 gcttccaggtgtacttctc 717
|||||||||||||||||||
Sbjct: 177 gcttccaggtgtacttctc 159
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7516
Number of Sequences: 8143
Number of extensions: 7516
Number of successful extensions: 2081
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2080
Number of HSP's gapped (non-prelim): 1
length of query: 3202
length of database: 4,702,463
effective HSP length: 17
effective length of query: 3185
effective length of database: 4,564,032
effective search space: 14536441920
effective search space used: 14536441920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)