BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.130
(860 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN821219.1|CN821219 HRO4428_H01_P02ZS5 Lib AA069E1X Aven... 426 e-119
gb|CN816185.1|CN816185 HRO4517_H07_O13ZS5 Lib AA071E1X Aven... 188 6e-048
gb|CN819635.1|CN819635 HRO4402_D11_G22ZS5 Lib AA069E1X Aven... 178 5e-045
gb|CN816615.1|CN816615 HRO4522_H03_O06ZS5 Lib AA071E1X Aven... 34 0.20
gb|CN818273.1|CN818273 HRO4470_C08_F16ZS5 Lib AA070E1X Aven... 34 0.20
gb|CN821015.1|CN821015 HRO4422_E12_I24ZS5 Lib AA069E1X Aven... 34 0.20
>gb|CN821219.1|CN821219 HRO4428_H01_P02ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4428_H01_P02, mRNA
sequence
Length = 576
Score = 426 bits (215), Expect = e-119
Identities = 302/331 (91%)
Strand = Plus / Plus
Query: 222 ttccccgcgcgcgccaggagaaggttccagaggggtctgaagaggaagcccatggcgctc 281
|||||||| || ||| | ||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 12 ttccccgcccgtgcccgcagaaggttcaagagaggtctcaagaggaagcccatggcgctc 71
Query: 282 atcaagaaactgcgcaaggcgaaaaaggatgctcctgctggtgagaagcctgagccagtc 341
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 72 gtcaagaagctgcgcaaggcgaaaaaggatgcccctgctggtgagaagcctgagcctgtg 131
Query: 342 aagacacatctccgtaacatgatcattgtccctgagatgattggaagcattgttggtgtc 401
| |||||||||||| ||||||||||||||||||||||||||||| ||| || | ||||||
Sbjct: 132 aggacacatctccgcaacatgatcattgtccctgagatgattggcagccttatcggtgtc 191
Query: 402 tacaacggcaagaccttcaaccaggttgagatcaagcctgagatgatcggccactacctt 461
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 192 tacaatggcaagaccttcaaccaggttgagatcaagcctgagatgattggccattacctt 251
Query: 462 gctgagttctccatctcctacaagccggtcaagcacggcaggcccggtatcggtgccacc 521
|||||||||||||||||||||||||| || ||||| || |||||||||||||||||||||
Sbjct: 252 gctgagttctccatctcctacaagcctgtgaagcatggtaggcccggtatcggtgccacc 311
Query: 522 cactcctcgcggtttattcctctgaaatgag 552
|||||||| ||||| || ||||| |||||||
Sbjct: 312 cactcctcccggttcatccctctcaaatgag 342
>gb|CN816185.1|CN816185 HRO4517_H07_O13ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_H07_O13, mRNA sequence
Length = 416
Score = 188 bits (95), Expect = 6e-048
Identities = 158/179 (88%)
Strand = Plus / Plus
Query: 351 ctccgtaacatgatcattgtccctgagatgattggaagcattgttggtgtctacaacggc 410
||||| ||||||||||| | |||||||||||||||||| | || ||| |||||||||||
Sbjct: 23 ctccgcaacatgatcatcatgcctgagatgattggaagcgtcgtcggtatctacaacggc 82
Query: 411 aagaccttcaaccaggttgagatcaagcctgagatgatcggccactaccttgctgagttc 470
||| |||||||| || |||||||||||||||||||| ||||||||||| || ||||||
Sbjct: 83 aaggccttcaactccgtcgagatcaagcctgagatgattggccactacctggcagagttc 142
Query: 471 tccatctcctacaagccggtcaagcacggcaggcccggtatcggtgccacccactcctc 529
||| ||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 143 tccctctcctacaagccagtcaagcacggaaggcctggtattggtgccacccactcctc 201
>gb|CN819635.1|CN819635 HRO4402_D11_G22ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_D11_G22, mRNA
sequence
Length = 354
Score = 178 bits (90), Expect = 5e-045
Identities = 141/158 (89%)
Strand = Plus / Plus
Query: 372 cctgagatgattggaagcattgttggtgtctacaacggcaagaccttcaaccaggttgag 431
|||||||||||||||||| | || ||| |||||||||||||| |||||||| || |||
Sbjct: 9 cctgagatgattggaagcgtcgtcggtatctacaacggcaaggccttcaactccgtcgag 68
Query: 432 atcaagcctgagatgatcggccactaccttgctgagttctccatctcctacaagccggtc 491
||||||||||||||||| ||||||||||| || ||||||||| ||||||||||||| |||
Sbjct: 69 atcaagcctgagatgattggccactacctggcagagttctccctctcctacaagccagtc 128
Query: 492 aagcacggcaggcccggtatcggtgccacccactcctc 529
|||||||| ||||| ||||| |||||||||||||||||
Sbjct: 129 aagcacggaaggcctggtattggtgccacccactcctc 166
>gb|CN816615.1|CN816615 HRO4522_H03_O06ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4522_H03_O06, mRNA sequence
Length = 788
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 310 atgctcctgctggtgag 326
|||||||||||||||||
Sbjct: 554 atgctcctgctggtgag 538
>gb|CN818273.1|CN818273 HRO4470_C08_F16ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C08_F16, mRNA sequence
Length = 487
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 96 gacgtcgatgtcgaacc 112
|||||||||||||||||
Sbjct: 436 gacgtcgatgtcgaacc 420
>gb|CN821015.1|CN821015 HRO4422_E12_I24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4422_E12_I24, mRNA
sequence
Length = 304
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 769 ggcttgattgaaatgtg 785
|||||||||||||||||
Sbjct: 51 ggcttgattgaaatgtg 67
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1956
Number of Sequences: 8143
Number of extensions: 1956
Number of successful extensions: 558
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 7
length of query: 860
length of database: 4,702,463
effective HSP length: 16
effective length of query: 844
effective length of database: 4,572,175
effective search space: 3858915700
effective search space used: 3858915700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)