BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS19f07.yg.2.1
(626 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response ... 52 1e-004
dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosom... 52 1e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 52 1e-004
gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5... 52 1e-004
ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE ... 52 1e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 52 1e-004
gb|AC025813.3|AC025813 Arabidopsis thaliana chromosome I cl... 46 0.007
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 46 0.007
gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis ... 46 0.007
gb|AY008390.1| Arabidopsis thaliana ARF11/IAA22 gene, compl... 46 0.007
gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induc... 46 0.007
gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At... 46 0.007
ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription ... 46 0.007
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 46 0.007
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.11
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 42 0.11
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 42 0.11
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 42 0.11
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 42 0.11
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 42 0.11
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 42 0.11
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 42 0.11
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.44
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.44
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 40 0.44
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 40 0.44
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 40 0.44
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 40 0.44
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 40 0.44
gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasi... 40 0.44
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 40 0.44
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 40 0.44
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 40 0.44
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 40 0.44
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 40 0.44
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 40 0.44
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 40 0.44
emb|AX507774.1| Sequence 2469 from Patent WO0216655 40 0.44
>gb|AF042196.1|AF042196 Arabidopsis thaliana auxin response factor 8 (ARF8) mRNA, complete
cds
Length = 2817
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
||||||||||||||||||||||||||
Sbjct: 1152 tgcagtcgattcatcccaaccaacct 1127
>dbj|AB024026.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15O15
Length = 23026
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
||||||||||||||||||||||||||
Sbjct: 17179 tgcagtcgattcatcccaaccaacct 17154
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
||||||||||||||||||||||||||
Sbjct: 13545678 tgcagtcgattcatcccaaccaacct 13545653
>gb|AY669790.1| Arabidopsis thaliana clone C105345 ARF8 (At5g37020) mRNA, complete
cds
Length = 2467
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
||||||||||||||||||||||||||
Sbjct: 1029 tgcagtcgattcatcccaaccaacct 1004
>ref|NM_123060.2| Arabidopsis thaliana ARF8 (AUXIN RESPONSE FACTOR 8); transcription
factor AT5G37020 (ARF8) mRNA, complete cds
Length = 2840
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
||||||||||||||||||||||||||
Sbjct: 1152 tgcagtcgattcatcccaaccaacct 1127
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 300 tgcagtcgattcatcccaaccaacct 325
||||||||||||||||||||||||||
Sbjct: 14649533 tgcagtcgattcatcccaaccaacct 14649508
>gb|AC025813.3|AC025813 Arabidopsis thaliana chromosome I clone F15H4, *** SEQUENCING IN
PROGRESS ***
Length = 91738
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 30272 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 30213
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 30212 gtaaaagggctactatt 30196
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 30857 ttttgctgcatactcatccattgaactag 30829
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 6630957 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 6631016
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 6631017 gtaaaagggctactatt 6631033
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 6630372 ttttgctgcatactcatccattgaactag 6630400
>gb|AC069143.3|T29M8 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 58738
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 20576 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 20635
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 20636 gtaaaagggctactatt 20652
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 19991 ttttgctgcatactcatccattgaactag 20019
>gb|AY008390.1| Arabidopsis thaliana ARF11/IAA22 gene, complete cds
Length = 7371
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 3198 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 3139
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 3138 gtaaaagggctactatt 3122
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 3783 ttttgctgcatactcatccattgaactag 3755
>gb|U53672.2|ATU53672 Arabidopsis thaliana early auxin-induced IAA22 mRNA, complete cds
Length = 3807
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 1066 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 1007
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 1006 gtaaaagggctactatt 990
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 1492 ttttgctgcatactcatccattgaactag 1464
>gb|AY669794.1| Arabidopsis thaliana clone C105352 ARF19 (At1g19220) mRNA, complete
cds
Length = 3292
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 848 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 789
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 788 gtaaaagggctactatt 772
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 1274 ttttgctgcatactcatccattgaactag 1246
>ref|NM_101780.1| Arabidopsis thaliana ARF19; transcription factor AT1G19220 (ARF19)
mRNA, complete cds
Length = 3588
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 848 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 789
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 788 gtaaaagggctactatt 772
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 1274 ttttgctgcatactcatccattgaactag 1246
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 46.1 bits (23), Expect = 0.007
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 478 ttgtattttgctaaagggatgacaaattctgatgggcntgcccttggattatagaaaata 537
|||||||| |||||||| | ||||| ||||| || | |||||||||||| |||| ||
Sbjct: 6631133 ttgtatttggctaaaggaactacaaactctgaaggacttgcccttggattgaagaagatg 6631192
Query: 538 gtaaatggnctactatt 554
||||| || ||||||||
Sbjct: 6631193 gtaaaagggctactatt 6631209
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 52 ttttgctgcatagccatccattgaactag 80
|||||||||||| |||||||||||||||
Sbjct: 6630548 ttttgctgcatactcatccattgaactag 6630576
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 218 gcggccgcccgggcaggtaca 198
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggtaca 238
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtaca 303
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggtaca 169
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 14 gcggccgcccgggcaggtaca 34
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 243 gcggccgcccgggcaggtaca 223
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 232 gcggccgcccgggcaggtaca 212
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggtaca 246
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 33 gcggccgcccgggcaggtac 52
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 62 gcggccgcccgggcaggtac 81
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 455 gcggccgcccgggcaggtac 436
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 65 gcggccgcccgggcaggtac 84
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 40 gcggccgcccgggcaggtac 59
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 385 gcggccgcccgggcaggtac 366
>gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BA9, mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtaca 21
||||||||||||||||||||
Sbjct: 557 cggccgcccgggcaggtaca 538
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 416 gcggccgcccgggcaggtac 397
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 401 gcggccgcccgggcaggtac 382
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 348 gcggccgcccgggcaggtac 329
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggtac 332
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggtac 278
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 471 gcggccgcccgggcaggtac 452
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 142 gcggccgcccgggcaggtac 123
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 40.1 bits (20), Expect = 0.44
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 268,383
Number of Sequences: 1013581
Number of extensions: 268383
Number of successful extensions: 20776
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20232
Number of HSP's gapped (non-prelim): 544
length of query: 626
length of database: 908,940,872
effective HSP length: 20
effective length of query: 606
effective length of database: 888,669,252
effective search space: 538533566712
effective search space used: 538533566712
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)