BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS16e03.yg.2.1
(608 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 50 4e-004
dbj|AB046870.1| Arabidopsis thaliana AHK3 mRNA for histidin... 50 4e-004
emb|AX507714.1| Sequence 2409 from Patent WO0216655 50 4e-004
emb|AX537477.1| Sequence 3 from Patent EP1241182 50 4e-004
gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis tha... 50 4e-004
emb|CS063643.1| Sequence 5 from Patent EP1522586 50 4e-004
ref|NM_102494.2| Arabidopsis thaliana AHK3 (ARABIDOPSIS HIS... 50 4e-004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 50 4e-004
dbj|DD159608.1| Transformed Cell co-expressing both of cyto... 50 4e-004
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 44 0.028
gb|CC051580.1|CC051580 SALK_009649.17.60.x Arabidopsis thal... 42 0.11
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.11
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 42 0.11
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 42 0.11
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 42 0.11
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 42 0.11
emb|AX507774.1| Sequence 2469 from Patent WO0216655 42 0.11
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.43
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.43
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 40 0.43
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 40 0.43
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 40 0.43
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 40 0.43
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 40 0.43
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 40 0.43
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 40 0.43
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 40 0.43
gb|CB074404.1|CB074404 EST00928 Virulent Peronospora parasi... 40 0.43
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 40 0.43
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 40 0.43
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 40 0.43
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 40 0.43
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 40 0.43
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 40 0.43
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 9499724 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 9499665
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 9499664 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 9499605
Query: 291 gactg 295
|||||
Sbjct: 9499604 gactg 9499600
>dbj|AB046870.1| Arabidopsis thaliana AHK3 mRNA for histidine kinase, complete cds
Length = 3111
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 2114 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 2055
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 2054 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 1995
Query: 291 gactg 295
|||||
Sbjct: 1994 gactg 1990
>emb|AX507714.1| Sequence 2409 from Patent WO0216655
Length = 3279
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 2210 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 2151
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 2150 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 2091
Query: 291 gactg 295
|||||
Sbjct: 2090 gactg 2086
>emb|AX537477.1| Sequence 3 from Patent EP1241182
Length = 3111
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 2114 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 2055
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 2054 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 1995
Query: 291 gactg 295
|||||
Sbjct: 1994 gactg 1990
>gb|AC004557.2|AC004557 Genomic sequence for Arabidopsis thaliana BAC F17L21 from chromosome I,
complete sequence
Length = 99690
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 34826 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 34767
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 34766 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 34707
Query: 291 gactg 295
|||||
Sbjct: 34706 gactg 34702
>emb|CS063643.1| Sequence 5 from Patent EP1522586
Length = 3111
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 2114 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 2055
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 2054 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 1995
Query: 291 gactg 295
|||||
Sbjct: 1994 gactg 1990
>ref|NM_102494.2| Arabidopsis thaliana AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) AT1G27320
(AHK3) mRNA, complete cds
Length = 3283
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 2114 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 2055
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 2054 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 1995
Query: 291 gactg 295
|||||
Sbjct: 1994 gactg 1990
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 9490928 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 9490869
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 9490868 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 9490809
Query: 291 gactg 295
|||||
Sbjct: 9490808 gactg 9490804
>dbj|DD159608.1| Transformed Cell co-expressing both of cytokinin receptor and
cytokinin biosynthesizing enzyme
Length = 3111
Score = 50.1 bits (25), Expect = 4e-004
Identities = 100/125 (80%)
Strand = Plus / Minus
Query: 171 aatccaatctctcccctcatgagtccaaccaagcatttgctgatgcttaatccaatgcca 230
|||||||| |||||| |||| |||||||| | |||||||| ||||| | |||||| ||
Sbjct: 2114 aatccaatttctcccttcatcagtccaactagacatttgcttatgctaagtccaattcct 2055
Query: 231 gtgcccccatggatgcgagcaatggatggacctacttgcatgaaaggggtgaagacacgg 290
||||| ||||| | | | |||||||| || |||||||||||||| || || | ||||
Sbjct: 2054 gtgcctccatgcgtcctggatatggatggtccgacttgcatgaaaggcgtaaaaatacgg 1995
Query: 291 gactg 295
|||||
Sbjct: 1994 gactg 1990
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacct 22
||||||||||||||||||||||
Sbjct: 416 gcggccgcccgggcaggtacct 395
>gb|CC051580.1|CC051580 SALK_009649.17.60.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_009649.17.60.x,
DNA sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 60 aatgcattgatccctttaaattctg 84
|||||||||||||||||| ||||||
Sbjct: 322 aatgcattgatccctttacattctg 346
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtacc 21
|||||||||||||||||||||
Sbjct: 33 gcggccgcccgggcaggtacc 53
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtacc 21
|||||||||||||||||||||
Sbjct: 65 gcggccgcccgggcaggtacc 85
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtacc 21
|||||||||||||||||||||
Sbjct: 40 gcggccgcccgggcaggtacc 60
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacc 21
|||||||||||||||||||||
Sbjct: 385 gcggccgcccgggcaggtacc 365
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacc 21
|||||||||||||||||||||
Sbjct: 471 gcggccgcccgggcaggtacc 451
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtacc 21
|||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtacc 25
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 218 gcggccgcccgggcaggtac 199
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggtac 239
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 304
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 62 gcggccgcccgggcaggtac 81
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggtac 170
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 455 gcggccgcccgggcaggtac 436
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 14 gcggccgcccgggcaggtac 33
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 243 gcggccgcccgggcaggtac 224
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 232 gcggccgcccgggcaggtac 213
>gb|CB074404.1|CB074404 EST00928 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF12 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtacc 21
||||||||||||||||||||
Sbjct: 612 cggccgcccgggcaggtacc 593
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 401 gcggccgcccgggcaggtac 382
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 348 gcggccgcccgggcaggtac 329
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggtac 332
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggtac 278
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggtac 247
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 142 gcggccgcccgggcaggtac 123
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 205,729
Number of Sequences: 1013581
Number of extensions: 205729
Number of successful extensions: 15535
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15345
Number of HSP's gapped (non-prelim): 190
length of query: 608
length of database: 908,940,872
effective HSP length: 20
effective length of query: 588
effective length of database: 888,669,252
effective search space: 522537520176
effective search space used: 522537520176
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)