BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 131 6e-029
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 131 6e-029
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 131 6e-029
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 131 6e-029
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 127 9e-028
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 127 9e-028
emb|AX412747.1| Sequence 511 from Patent WO0222675 127 9e-028
emb|AX508002.1| Sequence 2697 from Patent WO0216655 127 9e-028
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 127 9e-028
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 127 9e-028
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 127 9e-028
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 127 9e-028
emb|AX651854.1| Sequence 720 from Patent WO03000898 105 3e-021
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 105 3e-021
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 103 1e-020
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 103 1e-020
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 103 1e-020
gb|CL509491.1|CL509491 SAIL_812_E05.v2 SAIL Collection Arab... 92 5e-017
gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arab... 82 5e-014
dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosom... 80 2e-013
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 80 2e-013
ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTH... 80 2e-013
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 80 2e-013
dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosom... 68 7e-010
ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTH... 68 7e-010
gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4 62 5e-008
emb|AX059538.1| Sequence 271 from Patent WO0055325 62 5e-008
gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis tha... 62 5e-008
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 62 5e-008
emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosom... 62 5e-008
ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHA... 62 5e-008
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 62 5e-008
emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey ... 56 3e-006
gb|AV831087.1|AV831087 AV831087 RAFL9 Arabidopsis thaliana ... 54 1e-005
gb|AY099734.1| Arabidopsis thaliana putative glucan synthas... 54 1e-005
ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTH... 54 1e-005
gb|AQ963136.1|AQ963136 LERGJ63TF LERG Arabidopsis thaliana ... 48 7e-004
gb|AQ963137.1|AQ963137 LERGJ63TR LERG Arabidopsis thaliana ... 48 7e-004
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.042
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 42 0.042
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 42 0.042
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 42 0.042
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 42 0.042
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.17
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.17
gb|F15173.1|F15173 ATTS5467 Grenoble-B Arabidopsis thaliana... 40 0.17
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 40 0.17
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 40 0.17
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 40 0.17
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 40 0.17
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 40 0.17
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 40 0.17
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 40 0.17
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 40 0.17
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 40 0.17
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 40 0.17
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 40 0.17
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 40 0.17
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 40 0.17
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 40 0.17
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 40 0.17
emb|AX507774.1| Sequence 2469 from Patent WO0216655 40 0.17
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 40 0.17
gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasi... 38 0.66
gb|CB074404.1|CB074404 EST00928 Virulent Peronospora parasi... 38 0.66
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 38 0.66
emb|AX505609.1| Sequence 304 from Patent WO0216655 38 0.66
emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cD... 38 0.66
emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cD... 38 0.66
emb|AJ838785.1| Arabidopsis thaliana T-DNA flanking sequenc... 38 0.66
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 38 0.66
emb|CS137270.1| Sequence 241 from Patent WO2005047516 38 0.66
gb|BH633480.1|BH633480 SALK_042659 Arabidopsis thaliana TDN... 36 2.6
emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 2.6
gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseud... 36 2.6
gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudo... 36 2.6
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 36 2.6
emb|AX507947.1| Sequence 2642 from Patent WO0216655 36 2.6
emb|AX507948.1| Sequence 2643 from Patent WO0216655 36 2.6
emb|AX651674.1| Sequence 497 from Patent WO03000898 36 2.6
dbj|AK117254.1| Arabidopsis thaliana At4g34900 mRNA for put... 36 2.6
gb|AY171562.1| Arabidopsis thaliana xanthine dehydrogenase ... 36 2.6
gb|AY518202.1| Arabidopsis thaliana xanthine dehydrogenase ... 36 2.6
emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mito... 36 2.6
emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35... 36 2.6
emb|AJ294533.1|ATH294533 Arabidopsis thaliana mRNA for E2F-... 36 2.6
ref|NM_119655.2| Arabidopsis thaliana electron transporter/... 36 2.6
ref|NM_119656.2| Arabidopsis thaliana electron transporter/... 36 2.6
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 131 bits (66), Expect = 6e-029
Identities = 171/206 (83%)
Strand = Plus / Plus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
|||||||||||||| |||||||| ||| | |||||||| ||||| | ||||||||||||
Sbjct: 91054 gtactgaagtagaacccaattgtagtgaaataacaagaaagcatgcggaagaaatcaaat 91113
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || || |||| || | ||||||||| || ||||| || ||||| || || || |||
Sbjct: 91114 cggtgccccagcctatataggtcacggcttagagtttgctccccatttccgttagcgatc 91173
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
||||||||||||| || || || ||||| |||||||| || ||||| |||||||| |||
Sbjct: 91174 tttgcctcaaacattgaaatctggttgagtcctacatctctccctttaccaacttgtatg 91233
Query: 197 tattcatggtgagtaacattgccttc 222
|||||||| ||||| |||||||||||
Sbjct: 91234 tattcatgatgagtcacattgccttc 91259
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 131 bits (66), Expect = 6e-029
Identities = 171/206 (83%)
Strand = Plus / Minus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
|||||||||||||| |||||||| ||| | |||||||| ||||| | ||||||||||||
Sbjct: 979 gtactgaagtagaacccaattgtagtgaaataacaagaaagcatgcggaagaaatcaaat 920
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || || |||| || | ||||||||| || ||||| || ||||| || || || |||
Sbjct: 919 cggtgccccagcctatataggtcacggcttagagtttgctccccatttccgttagcgatc 860
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
||||||||||||| || || || ||||| |||||||| || ||||| |||||||| |||
Sbjct: 859 tttgcctcaaacattgaaatctggttgagtcctacatctctccctttaccaacttgtatg 800
Query: 197 tattcatggtgagtaacattgccttc 222
|||||||| ||||| |||||||||||
Sbjct: 799 tattcatgatgagtcacattgccttc 774
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 131 bits (66), Expect = 6e-029
Identities = 171/206 (83%)
Strand = Plus / Minus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
|||||||||||||| |||||||| ||| | |||||||| ||||| | ||||||||||||
Sbjct: 4589 gtactgaagtagaacccaattgtagtgaaataacaagaaagcatgcggaagaaatcaaat 4530
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || || |||| || | ||||||||| || ||||| || ||||| || || || |||
Sbjct: 4529 cggtgccccagcctatataggtcacggcttagagtttgctccccatttccgttagcgatc 4470
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
||||||||||||| || || || ||||| |||||||| || ||||| |||||||| |||
Sbjct: 4469 tttgcctcaaacattgaaatctggttgagtcctacatctctccctttaccaacttgtatg 4410
Query: 197 tattcatggtgagtaacattgccttc 222
|||||||| ||||| |||||||||||
Sbjct: 4409 tattcatgatgagtcacattgccttc 4384
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 131 bits (66), Expect = 6e-029
Identities = 171/206 (83%)
Strand = Plus / Minus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
|||||||||||||| |||||||| ||| | |||||||| ||||| | ||||||||||||
Sbjct: 13605433 gtactgaagtagaacccaattgtagtgaaataacaagaaagcatgcggaagaaatcaaat 13605374
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || || |||| || | ||||||||| || ||||| || ||||| || || || |||
Sbjct: 13605373 cggtgccccagcctatataggtcacggcttagagtttgctccccatttccgttagcgatc 13605314
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
||||||||||||| || || || ||||| |||||||| || ||||| |||||||| |||
Sbjct: 13605313 tttgcctcaaacattgaaatctggttgagtcctacatctctccctttaccaacttgtatg 13605254
Query: 197 tattcatggtgagtaacattgccttc 222
|||||||| ||||| |||||||||||
Sbjct: 13605253 tattcatgatgagtcacattgccttc 13605228
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 1649410 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 1649469
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 1649470 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 1649529
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 1649530 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 1649589
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 1649590 atattcatgatgagtcacatttccttcacgca 1649621
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Minus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 4572 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 4513
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 4512 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 4453
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 4452 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 4393
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 4392 atattcatgatgagtcacatttccttcacgca 4361
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Minus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 4287 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 4228
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 4227 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 4168
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 4167 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 4108
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 4107 atattcatgatgagtcacatttccttcacgca 4076
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Minus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 4287 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 4228
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 4227 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 4168
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 4167 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 4108
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 4107 atattcatgatgagtcacatttccttcacgca 4076
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 31058 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 31117
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 31118 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 31177
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 31178 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 31237
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 31238 atattcatgatgagtcacatttccttcacgca 31269
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 81607 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 81666
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 81667 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 81726
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 81727 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 81786
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 81787 atattcatgatgagtcacatttccttcacgca 81818
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Minus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 4572 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 4513
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 4512 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 4453
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 4452 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 4393
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 4392 atattcatgatgagtcacatttccttcacgca 4361
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 127 bits (64), Expect = 9e-028
Identities = 175/212 (82%)
Strand = Plus / Plus
Query: 16 ggtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| |||||||| ||| | |||||||||||||||| ||||||||||||
Sbjct: 1649533 ggtactgaagtagaacccaattgtggtgaaataacaagacagcatccggaagaaatcaaa 1649592
Query: 76 gcgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctat 135
|| || ||||||| || | ||| || |||| ||||| |||||||| ||||| || ||
Sbjct: 1649593 tcggtgtcctagcctataaaggtcgcgactcaaagtttgctcgccatttccattggcgat 1649652
Query: 136 ctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcat 195
||||||||||||| || || || ||||| || ||||| || ||||| |||||||| ||
Sbjct: 1649653 ttttgcctcaaacattgagatctggttgaggcccacatctctccctttaccaacttgtat 1649712
Query: 196 gtattcatggtgagtaacattgccttcgcgca 227
|||||||| ||||| ||||| ||||| ||||
Sbjct: 1649713 atattcatgatgagtcacatttccttcacgca 1649744
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 105 bits (53), Expect = 3e-021
Identities = 110/129 (85%)
Strand = Plus / Minus
Query: 119 ccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatccctt 178
|||||||| || || ||||| |||||||||| ||| || ||||| ||||| ||||| |||
Sbjct: 4610 ccattgccgttagcaatcttggcctcaaacatagagatctgatttagaccaacatctctt 4551
Query: 179 cctttgccaacttgcatgtattcatggtgagtaacattgccttcgcgcaatgtggaattg 238
||||| |||||||| ||||||||||| || |||||||| ||||| || | ||| ||||||
Sbjct: 4550 cctttaccaacttgtatgtattcatgatgggtaacatttccttcacgaagtgtagaattg 4491
Query: 239 aatcctgca 247
|||||||||
Sbjct: 4490 aatcctgca 4482
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 105 bits (53), Expect = 3e-021
Identities = 110/129 (85%)
Strand = Plus / Minus
Query: 119 ccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatccctt 178
|||||||| || || ||||| |||||||||| ||| || ||||| ||||| ||||| |||
Sbjct: 4752 ccattgccgttagcaatcttggcctcaaacatagagatctgatttagaccaacatctctt 4693
Query: 179 cctttgccaacttgcatgtattcatggtgagtaacattgccttcgcgcaatgtggaattg 238
||||| |||||||| ||||||||||| || |||||||| ||||| || | ||| ||||||
Sbjct: 4692 cctttaccaacttgtatgtattcatgatgggtaacatttccttcacgaagtgtagaattg 4633
Query: 239 aatcctgca 247
|||||||||
Sbjct: 4632 aatcctgca 4624
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 103 bits (52), Expect = 1e-020
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 119 ccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatccctt 178
|||||||| || || ||||| |||||||||| ||| || ||||| ||||| ||||| |||
Sbjct: 3925160 ccattgccgttagcaatcttggcctcaaacatagagatctgatttagaccaacatctctt 3925219
Query: 179 cctttgccaacttgcatgtattcatggtgagtaacattgccttcgcgcaatgtggaattg 238
||||| |||||||| ||||||||||| || |||||||| ||||| || | ||| ||||||
Sbjct: 3925220 cctttaccaacttgtatgtattcatgatgggtaacatttccttcacgaagtgtagaattg 3925279
Query: 239 aatcctgc 246
||||||||
Sbjct: 3925280 aatcctgc 3925287
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 131 gctatctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaact 190
||||||||||||||||||| || ||||| ||||| || ||||| || ||||| ||||||
Sbjct: 13465446 gctatctttgcctcaaacattgaaatttggttgagtcccacatctctccctttaccaact 13465387
Query: 191 tgcatgtattcatg 204
|| |||||||||||
Sbjct: 13465386 tgtatgtattcatg 13465373
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 103 bits (52), Expect = 1e-020
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 119 ccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatccctt 178
|||||||| || || ||||| |||||||||| ||| || ||||| ||||| ||||| |||
Sbjct: 64001 ccattgccgttagcaatcttggcctcaaacatagagatctgatttagaccaacatctctt 64060
Query: 179 cctttgccaacttgcatgtattcatggtgagtaacattgccttcgcgcaatgtggaattg 238
||||| |||||||| ||||||||||| || |||||||| ||||| || | ||| ||||||
Sbjct: 64061 cctttaccaacttgtatgtattcatgatgggtaacatttccttcacgaagtgtagaattg 64120
Query: 239 aatcctgc 246
||||||||
Sbjct: 64121 aatcctgc 64128
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 103 bits (52), Expect = 1e-020
Identities = 109/128 (85%)
Strand = Plus / Plus
Query: 119 ccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatccctt 178
|||||||| || || ||||| |||||||||| ||| || ||||| ||||| ||||| |||
Sbjct: 4112187 ccattgccgttagcaatcttggcctcaaacatagagatctgatttagaccaacatctctt 4112246
Query: 179 cctttgccaacttgcatgtattcatggtgagtaacattgccttcgcgcaatgtggaattg 238
||||| |||||||| ||||||||||| || |||||||| ||||| || | ||| ||||||
Sbjct: 4112247 cctttaccaacttgtatgtattcatgatgggtaacatttccttcacgaagtgtagaattg 4112306
Query: 239 aatcctgc 246
||||||||
Sbjct: 4112307 aatcctgc 4112314
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 131 gctatctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaact 190
||||||||||||||||||| || ||||| ||||| || ||||| || ||||| ||||||
Sbjct: 14549301 gctatctttgcctcaaacattgaaatttggttgagtcccacatctctccctttaccaact 14549242
Query: 191 tgcatgtattcatg 204
|| |||||||||||
Sbjct: 14549241 tgtatgtattcatg 14549228
>gb|CL509491.1|CL509491 SAIL_812_E05.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_812_E05.v2, DNA sequence
Length = 886
Score = 91.7 bits (46), Expect = 5e-017
Identities = 106/126 (84%)
Strand = Plus / Plus
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
||||||||| || ||||| || ||||| || || || |||||||||||||||| || ||
Sbjct: 100 gtcacggcttagagtttgctccccatttccgttagcgatctttgcctcaaacattgaaat 159
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| ||||| |||||||| || ||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 160 ctggttgagtcctacatctctccctttaccaacttgtatgtattcatgatgagtcacatt 219
Query: 217 gccttc 222
||||||
Sbjct: 220 gccttc 225
>gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT12585, DNA sequence
Length = 525
Score = 81.8 bits (41), Expect = 5e-014
Identities = 77/89 (86%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacattg 217
||||| ||||| ||||| |||||||| |||||||| ||||||||||| || ||||||||
Sbjct: 42 tgatttagaccaacatctcttcctttaccaacttgtatgtattcatgatgggtaacattt 101
Query: 218 ccttcgcgcaatgtggaattgaatcctgc 246
||||| || | ||| ||||||||||||||
Sbjct: 102 ccttcacgaagtgtagaattgaatcctgc 130
>dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE1
Length = 84462
Score = 79.8 bits (40), Expect = 2e-013
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 18 tactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagc 77
||||||||||||| ||||| |||||| | |||||||||| ||| |||||||||||||| |
Sbjct: 29060 tactgaagtagaatccaatggttgtgaaataacaagacaacattctgaagaaatcaaaac 29001
Query: 78 gatgacctagccggtagatgtcacggct 105
| || |||| ||||| |||||||||||
Sbjct: 29000 gttgtcctaaacggtatatgtcacggct 28973
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 79.8 bits (40), Expect = 2e-013
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 18 tactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagc 77
||||||||||||| ||||| |||||| | |||||||||| ||| |||||||||||||| |
Sbjct: 4891003 tactgaagtagaatccaatggttgtgaaataacaagacaacattctgaagaaatcaaaac 4890944
Query: 78 gatgacctagccggtagatgtcacggct 105
| || |||| ||||| |||||||||||
Sbjct: 4890943 gttgtcctaaacggtatatgtcacggct 4890916
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatc 174
|||||||||| |||||||||||| || |||||
Sbjct: 2298403 tcaaacagagctatttgattgagcccaacatc 2298372
>ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTHASE-LIKE 4);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G14570 (ATGSL04) mRNA, complete cds
Length = 5922
Score = 79.8 bits (40), Expect = 2e-013
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 18 tactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagc 77
||||||||||||| ||||| |||||| | |||||||||| ||| |||||||||||||| |
Sbjct: 4651 tactgaagtagaatccaatggttgtgaaataacaagacaacattctgaagaaatcaaaac 4592
Query: 78 gatgacctagccggtagatgtcacggct 105
| || |||| ||||| |||||||||||
Sbjct: 4591 gttgtcctaaacggtatatgtcacggct 4564
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 79.8 bits (40), Expect = 2e-013
Identities = 76/88 (86%)
Strand = Plus / Minus
Query: 18 tactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagc 77
||||||||||||| ||||| |||||| | |||||||||| ||| |||||||||||||| |
Sbjct: 4901107 tactgaagtagaatccaatggttgtgaaataacaagacaacattctgaagaaatcaaaac 4901048
Query: 78 gatgacctagccggtagatgtcacggct 105
| || |||| ||||| |||||||||||
Sbjct: 4901047 gttgtcctaaacggtatatgtcacggct 4901020
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 143 tcaaacagagatatttgattgagacctacatc 174
|||||||||| |||||||||||| || |||||
Sbjct: 2268021 tcaaacagagctatttgattgagcccaacatc 2268052
>dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F5H8
Length = 70098
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 131 gctatctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaact 190
||||||||||||||||||| || ||||| ||||| || ||||| || ||||| ||||||
Sbjct: 61887 gctatctttgcctcaaacattgaaatttggttgagtcccacatctctccctttaccaact 61828
Query: 191 tgcatgtattcatg 204
|| |||||||||||
Sbjct: 61827 tgtatgtattcatg 61814
>ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTHASE-LIKE 9);
1,3-beta-glucan synthase AT5G36870 (ATGSL09) mRNA,
complete cds
Length = 5589
Score = 67.9 bits (34), Expect = 7e-010
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 131 gctatctttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaact 190
||||||||||||||||||| || ||||| ||||| || ||||| || ||||| ||||||
Sbjct: 4211 gctatctttgcctcaaacattgaaatttggttgagtcccacatctctccctttaccaact 4152
Query: 191 tgcatgtattcatg 204
|| |||||||||||
Sbjct: 4151 tgtatgtattcatg 4138
>gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4
Length = 80196
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| ||| || ||||| | ||| ||||||||||||||||| || || |||||||||
Sbjct: 11537 tcaaacatagagatctgattcaaacccacatcccttcctttgcctacctgaatgtattca 11478
Query: 203 tggtgagtaac 213
||||| |||||
Sbjct: 11477 tggtgtgtaac 11467
>emb|AX059538.1| Sequence 271 from Patent WO0055325
Length = 47489
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| ||| || ||||| | ||| ||||||||||||||||| || || |||||||||
Sbjct: 2040 tcaaacatagagatctgattcaaacccacatcccttcctttgcctacctgaatgtattca 1981
Query: 203 tggtgagtaac 213
||||| |||||
Sbjct: 1980 tggtgtgtaac 1970
>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
complete sequence
Length = 183147
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| ||| || ||||| | ||| ||||||||||||||||| || || |||||||||
Sbjct: 180047 tcaaacatagagatctgattcaaacccacatcccttcctttgcctacctgaatgtattca 180106
Query: 203 tggtgagtaac 213
||||| |||||
Sbjct: 180107 tggtgtgtaac 180117
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| ||| || ||||| | ||| ||||||||||||||||| || || |||||||||
Sbjct: 2539865 tcaaacatagagatctgattcaaacccacatcccttcctttgcctacctgaatgtattca 2539806
Query: 203 tggtgagtaac 213
||||| |||||
Sbjct: 2539805 tggtgtgtaac 2539795
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
Length = 198563
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| ||| || ||||| | ||| ||||||||||||||||| || || |||||||||
Sbjct: 73062 tcaaacatagagatctgattcaaacccacatcccttcctttgcctacctgaatgtattca 73003
Query: 203 tggtgagtaac 213
||||| |||||
Sbjct: 73002 tggtgtgtaac 72992
>ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan
synthase/ transferase, transferring glycosyl groups
AT4G04970 (ATGSL1) mRNA, complete cds
Length = 5827
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| ||| || ||||| | ||| ||||||||||||||||| || || |||||||||
Sbjct: 3920 tcaaacatagagatctgattcaaacccacatcccttcctttgcctacctgaatgtattca 3861
Query: 203 tggtgagtaac 213
||||| |||||
Sbjct: 3860 tggtgtgtaac 3850
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 61.9 bits (31), Expect = 5e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||||| ||| || ||||| | ||| ||||||||||||||||| || || |||||||||
Sbjct: 2541045 tcaaacatagagatctgattcaaacccacatcccttcctttgcctacctgaatgtattca 2540986
Query: 203 tggtgagtaac 213
||||| |||||
Sbjct: 2540985 tggtgtgtaac 2540975
>emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey sequence T7 end of BAC T13I8 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 56.0 bits (28), Expect = 3e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 170 acatcccttcctttgccaacttgcatgtattcatggtgagtaac 213
||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 467 acatcccttcctttgcctacctgaatgtattcatggtgtgtaac 424
>gb|AV831087.1|AV831087 AV831087 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-84-B14 5',
mRNA sequence
Length = 547
Score = 54.0 bits (27), Expect = 1e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
|||||||||| |||||||||||| || ||||| | |||||||| || || || || |||
Sbjct: 189 tcaaacagagctatttgattgagcccaacatctcgccctttgcccacctgaatatactca 130
Query: 203 tggtgagtaacattgcctt 221
|| ||||||||||| ||||
Sbjct: 129 tgatgagtaacattccctt 111
>gb|AY099734.1| Arabidopsis thaliana putative glucan synthase (At3g07160) mRNA,
complete cds
Length = 1780
Score = 54.0 bits (27), Expect = 1e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
|||||||||| |||||||||||| || ||||| | |||||||| || || || || |||
Sbjct: 189 tcaaacagagctatttgattgagcccaacatctcgccctttgcccacctgaatatactca 130
Query: 203 tggtgagtaacattgcctt 221
|| ||||||||||| ||||
Sbjct: 129 tgatgagtaacattccctt 111
>ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTHASE-LIKE 10);
1,3-beta-glucan synthase AT3G07160 (ATGSL10) mRNA,
complete cds
Length = 5981
Score = 54.0 bits (27), Expect = 1e-005
Identities = 66/79 (83%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
|||||||||| |||||||||||| || ||||| | |||||||| || || || || |||
Sbjct: 4403 tcaaacagagctatttgattgagcccaacatctcgccctttgcccacctgaatatactca 4344
Query: 203 tggtgagtaacattgcctt 221
|| ||||||||||| ||||
Sbjct: 4343 tgatgagtaacattccctt 4325
>gb|AQ963136.1|AQ963136 LERGJ63TF LERG Arabidopsis thaliana genomic clone LERGJ63, DNA
sequence
Length = 616
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 18 tactgaagtagaaaccaattgttgtgtagtaacaagacagcatc 61
||||||||||||| ||||| |||||| | |||||||||| ||||
Sbjct: 570 tactgaagtagaatccaatggttgtgaaataacaagacaacatc 613
>gb|AQ963137.1|AQ963137 LERGJ63TR LERG Arabidopsis thaliana genomic clone LERGJ63, DNA
sequence
Length = 625
Score = 48.1 bits (24), Expect = 7e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 18 tactgaagtagaaaccaattgttgtgtagtaacaagacagcatc 61
||||||||||||| ||||| |||||| | |||||||||| ||||
Sbjct: 56 tactgaagtagaatccaatggttgtgaaataacaagacaacatc 13
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtact 52
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 401 gcggccgcccgggcaggtact 381
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 348 gcggccgcccgggcaggtact 328
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggtact 331
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 142 gcggccgcccgggcaggtact 122
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 33 gcggccgcccgggcaggtac 52
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 218 gcggccgcccgggcaggtac 199
>gb|F15173.1|F15173 ATTS5467 Grenoble-B Arabidopsis thaliana cDNA clone GBGF233 5',
mRNA sequence
Length = 235
Score = 40.1 bits (20), Expect = 0.17
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 110 gtttgttcgccattgccatttgctatctttgcctcaaaca 149
||||| |||||||| ||||| || || |||||||||||||
Sbjct: 85 gtttgctcgccatttccattggcgatttttgcctcaaaca 46
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggtac 239
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 304
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 62 gcggccgcccgggcaggtac 81
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggtac 170
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 455 gcggccgcccgggcaggtac 436
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 65 gcggccgcccgggcaggtac 84
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 40 gcggccgcccgggcaggtac 59
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 14 gcggccgcccgggcaggtac 33
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 385 gcggccgcccgggcaggtac 366
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 243 gcggccgcccgggcaggtac 224
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 232 gcggccgcccgggcaggtac 213
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 416 gcggccgcccgggcaggtac 397
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggtac 278
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 471 gcggccgcccgggcaggtac 452
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggtac 247
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
sequence
Length = 99128
Score = 40.1 bits (20), Expect = 0.17
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatc 174
|||||||||| |||||||||||| || |||||
Sbjct: 66768 tcaaacagagctatttgattgagcccaacatc 66737
>gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BA9, mRNA sequence
Length = 560
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 557 cggccgcccgggcaggtac 539
>gb|CB074404.1|CB074404 EST00928 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF12 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 617
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtac 20
|||||||||||||||||||
Sbjct: 612 cggccgcccgggcaggtac 594
>gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3Ka) mRNA, complete cds
Length = 2267
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 18 gcggccgcccgggcaggta 36
>emb|AX505609.1| Sequence 304 from Patent WO0216655
Length = 414
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 11 gcggccgcccgggcaggta 29
>emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZB11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1717
Score = 38.2 bits (19), Expect = 0.66
Identities = 64/79 (81%)
Strand = Plus / Minus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||| |||| |||||||||||| || ||||| | |||||||| || || || || |||
Sbjct: 212 tcaaatagagctatttgattgagcccaacatctcgccctttgcccacctgaatatactca 153
Query: 203 tggtgagtaacattgcctt 221
|| ||||||| ||| ||||
Sbjct: 152 tgatgagtaaaattccctt 134
>emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cDNA Complete sequence from
clone GSLTFB52ZD04 of Flowers and buds of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1385
Score = 38.2 bits (19), Expect = 0.66
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 17 gtactgaagtagaaaccaattgt 39
|||||||||||||| ||||||||
Sbjct: 25 gtactgaagtagaacccaattgt 3
>emb|AJ838785.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
405F08
Length = 664
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 3 ggccgcccgggcaggtact 21
|||||||||||||||||||
Sbjct: 151 ggccgcccgggcaggtact 133
>emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3K alpha protein kinase
Length = 2189
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 18 gcggccgcccgggcaggta 36
>emb|CS137270.1| Sequence 241 from Patent WO2005047516
Length = 1371
Score = 38.2 bits (19), Expect = 0.66
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggta 276
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 153 gcggccgcccgggcaggt 170
>gb|BH633480.1|BH633480 SALK_042659 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_042659, DNA sequence
Length = 453
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 117 cgccattgccatttgcta 134
||||||||||||||||||
Sbjct: 24 cgccattgccatttgcta 7
>emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
417C12, genomic survey sequence
Length = 541
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 18 gcggccgcccgggcaggt 1
>gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-G9 similar
to ARF GAP-like zinc finger-containing protein (ZIGA2),
mRNA sequence
Length = 746
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 52 gcggccgcccgggcaggt 69
>gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-G7 similar
to putative 60S ribosomal protein L18, mRNA sequence
Length = 602
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 51 gcggccgcccgggcaggt 68
>gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-H5 similar
to WD repeat domain containing protein, mRNA sequence
Length = 473
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 356 gcggccgcccgggcaggt 339
>emb|AX507947.1| Sequence 2642 from Patent WO0216655
Length = 4095
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2908 cctgaagaaatcaaagagatga 2929
>emb|AX507948.1| Sequence 2643 from Patent WO0216655
Length = 4080
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2893 cctgaagaaatcaaagagatga 2914
>emb|AX651674.1| Sequence 497 from Patent WO03000898
Length = 4080
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2893 cctgaagaaatcaaagagatga 2914
>dbj|AK117254.1| Arabidopsis thaliana At4g34900 mRNA for putative xanthine
dehydrogenase, complete cds, clone: RAFL16-81-C17
Length = 4289
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2968 cctgaagaaatcaaagagatga 2989
>gb|AY171562.1| Arabidopsis thaliana xanthine dehydrogenase 1 (XDH1) mRNA, complete
cds
Length = 4282
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2904 cctgaagaaatcaaagagatga 2925
>gb|AY518202.1| Arabidopsis thaliana xanthine dehydrogenase 2 mRNA, complete cds
Length = 4109
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2886 cctgaagaaatcaaagagatga 2907
>emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mitochondrial half-ABC transporter
(STA1 gene)
Length = 2452
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 2411 gcggccgcccgggcaggt 2394
>emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35-like splicing factor SCL28, 28
kD
Length = 1122
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 19 gcggccgcccgggcaggt 36
>emb|AJ294533.1|ATH294533 Arabidopsis thaliana mRNA for E2F-related protein (e2Fb gene)
Length = 1556
Score = 36.2 bits (18), Expect = 2.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 1 gcggccgcccgggcaggt 18
>ref|NM_119655.2| Arabidopsis thaliana electron transporter/ iron ion binding /
oxidoreductase/ xanthine dehydrogenase AT4G34890 mRNA,
complete cds
Length = 4254
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2904 cctgaagaaatcaaagagatga 2925
>ref|NM_119656.2| Arabidopsis thaliana electron transporter/ iron ion binding /
oxidoreductase/ xanthine dehydrogenase AT4G34900 mRNA,
complete cds
Length = 4216
Score = 36.2 bits (18), Expect = 2.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 61 cctgaagaaatcaaagcgatga 82
|||||||||||||||| |||||
Sbjct: 2896 cctgaagaaatcaaagagatga 2917
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,710
Number of Sequences: 1013581
Number of extensions: 125710
Number of successful extensions: 35262
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33152
Number of HSP's gapped (non-prelim): 2102
length of query: 247
length of database: 908,940,872
effective HSP length: 19
effective length of query: 228
effective length of database: 889,682,833
effective search space: 202847685924
effective search space used: 202847685924
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)