BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM3d10.yg.2.1
(683 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY069868.1| Arabidopsis thaliana AT5g11110/T5K6_100 mRNA... 78 2e-012
gb|BT002697.1| Arabidopsis thaliana At5g11110/T5K6_100 gene... 78 2e-012
ref|NM_121149.3| Arabidopsis thaliana unknown protein AT5G1... 78 2e-012
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 62 1e-007
emb|AL360314.1|ATF2I11 Arabidopsis thaliana DNA chromosome ... 62 1e-007
emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5... 62 1e-007
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 62 1e-007
gb|CB257846.1|CB257846 44-E011804-014-004-H12-T7R MPIZ-ADIS... 52 1e-004
gb|AY039911.1| Arabidopsis thaliana putative sucrose-phosph... 52 1e-004
gb|AY079334.1| Arabidopsis thaliana putative sucrose-phosph... 52 1e-004
emb|CQ805578.1| Sequence 1989 from Patent WO2004035798 52 1e-004
ref|NM_122035.1| Arabidopsis thaliana transferase, transfer... 52 1e-004
emb|AL091980.1|CNS00V8U Arabidopsis thaliana genome survey ... 50 5e-004
gb|BH617837.1|BH617837 SALK_037958 Arabidopsis thaliana TDN... 48 0.002
gb|CB185840.1|CB185840 EST01031 Arabidopsis virulent Pseudo... 48 0.002
gb|AF096373.1|T9A4 Arabidopsis thaliana BAC T9A4 48 0.002
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 48 0.002
emb|CQ805456.1| Sequence 1867 from Patent WO2004035798 48 0.002
dbj|AK175938.1| Arabidopsis thaliana mRNA for sucrose-phosp... 48 0.002
emb|AL049487.1|ATF28M11 Arabidopsis thaliana DNA chromosome... 48 0.002
emb|AL161516.2|ATCHRIV28 Arabidopsis thaliana DNA chromosom... 48 0.002
dbj|AK220698.1| Arabidopsis thaliana mRNA for sucrose-phosp... 48 0.002
dbj|AK220923.1| Arabidopsis thaliana mRNA for sucrose-phosp... 48 0.002
dbj|AK221092.1| Arabidopsis thaliana mRNA for sucrose-phosp... 48 0.002
ref|NM_001036532.1| Arabidopsis thaliana unknown protein AT... 48 0.002
ref|NM_117080.4| Arabidopsis thaliana transferase, transfer... 48 0.002
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 48 0.002
>gb|AY069868.1| Arabidopsis thaliana AT5g11110/T5K6_100 mRNA, complete cds
Length = 2803
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252
|||||||| |||||| |||| || |||||||||||||| ||||| || ||||| ||||||
Sbjct: 940 gatccaccaatttggtctgagattatgcgcttcttctctaacccgcgcaagcctatgatt 999
Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttgg 311
|| ||||||||||| || || || || ||||| | ||||||||||||||| |||||
Sbjct: 1000 ctcgctcttgctcggccagaccctaaaaagaacttggttactctagtcaaagcctttgg 1058
>gb|BT002697.1| Arabidopsis thaliana At5g11110/T5K6_100 gene, complete cds
Length = 2685
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252
|||||||| |||||| |||| || |||||||||||||| ||||| || ||||| ||||||
Sbjct: 925 gatccaccaatttggtctgagattatgcgcttcttctctaacccgcgcaagcctatgatt 984
Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttgg 311
|| ||||||||||| || || || || ||||| | ||||||||||||||| |||||
Sbjct: 985 ctcgctcttgctcggccagaccctaaaaagaacttggttactctagtcaaagcctttgg 1043
>ref|NM_121149.3| Arabidopsis thaliana unknown protein AT5G11110 mRNA, complete cds
Length = 3576
Score = 77.8 bits (39), Expect = 2e-012
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 193 gatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgatt 252
|||||||| |||||| |||| || |||||||||||||| ||||| || ||||| ||||||
Sbjct: 1584 gatccaccaatttggtctgagattatgcgcttcttctctaacccgcgcaagcctatgatt 1643
Query: 253 cttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcatttgg 311
|| ||||||||||| || || || || ||||| | ||||||||||||||| |||||
Sbjct: 1644 ctcgctcttgctcggccagaccctaaaaagaacttggttactctagtcaaagcctttgg 1702
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 61.9 bits (31), Expect = 1e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 217 atgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggatccg 276
|||||||||||||| ||||| || ||||| |||||||| ||||||||||| || || ||
Sbjct: 3351419 atgcgcttcttctctaacccgcgcaagcctatgattctcgctcttgctcggccagaccct 3351478
Query: 277 aagaagaatatcactactctagtcaaagcatttgg 311
|| ||||| | ||||||||||||||| |||||
Sbjct: 3351479 aaaaagaacttggttactctagtcaaagcctttgg 3351513
>emb|AL360314.1|ATF2I11 Arabidopsis thaliana DNA chromosome 5, BAC clone F2I11 (ESSA project)
Length = 110992
Score = 61.9 bits (31), Expect = 1e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 217 atgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggatccg 276
|||||||||||||| ||||| || ||||| |||||||| ||||||||||| || || ||
Sbjct: 1210 atgcgcttcttctctaacccgcgcaagcctatgattctcgctcttgctcggccagaccct 1269
Query: 277 aagaagaatatcactactctagtcaaagcatttgg 311
|| ||||| | ||||||||||||||| |||||
Sbjct: 1270 aaaaagaacttggttactctagtcaaagcctttgg 1304
>emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project)
Length = 96379
Score = 61.9 bits (31), Expect = 1e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 217 atgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggatccg 276
|||||||||||||| ||||| || ||||| |||||||| ||||||||||| || || ||
Sbjct: 89589 atgcgcttcttctctaacccgcgcaagcctatgattctcgctcttgctcggccagaccct 89648
Query: 277 aagaagaatatcactactctagtcaaagcatttgg 311
|| ||||| | ||||||||||||||| |||||
Sbjct: 89649 aaaaagaacttggttactctagtcaaagcctttgg 89683
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 61.9 bits (31), Expect = 1e-007
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 217 atgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggatccg 276
|||||||||||||| ||||| || ||||| |||||||| ||||||||||| || || ||
Sbjct: 3538450 atgcgcttcttctctaacccgcgcaagcctatgattctcgctcttgctcggccagaccct 3538509
Query: 277 aagaagaatatcactactctagtcaaagcatttgg 311
|| ||||| | ||||||||||||||| |||||
Sbjct: 3538510 aaaaagaacttggttactctagtcaaagcctttgg 3538544
>gb|CB257846.1|CB257846 44-E011804-014-004-H12-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771H124Q 5-PRIME, mRNA sequence
Length = 625
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 190 ccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatg 249
||||||||||| || |||||||| |||||||| ||||| || || |||| ||||| |||
Sbjct: 499 ccagatccaccaatatgggctgagataatgcgtttcttttcgaattcccgaaagcctatg 558
Query: 250 attcttgctcttgc 263
|| ||||| |||||
Sbjct: 559 atacttgcccttgc 572
>gb|AY039911.1| Arabidopsis thaliana putative sucrose-phosphate synthase (At5g20280)
mRNA, complete cds
Length = 3494
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 190 ccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatg 249
||||||||||| || |||||||| |||||||| ||||| || || |||| ||||| |||
Sbjct: 1441 ccagatccaccaatatgggctgagataatgcgtttcttttcgaattcccgaaagcctatg 1500
Query: 250 attcttgctcttgc 263
|| ||||| |||||
Sbjct: 1501 atacttgcccttgc 1514
>gb|AY079334.1| Arabidopsis thaliana putative sucrose-phosphate synthase (At5g20280)
mRNA, complete cds
Length = 3163
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 190 ccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatg 249
||||||||||| || |||||||| |||||||| ||||| || || |||| ||||| |||
Sbjct: 1375 ccagatccaccaatatgggctgagataatgcgtttcttttcgaattcccgaaagcctatg 1434
Query: 250 attcttgctcttgc 263
|| ||||| |||||
Sbjct: 1435 atacttgcccttgc 1448
>emb|CQ805578.1| Sequence 1989 from Patent WO2004035798
Length = 3132
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 190 ccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatg 249
||||||||||| || |||||||| |||||||| ||||| || || |||| ||||| |||
Sbjct: 1375 ccagatccaccaatatgggctgagataatgcgtttcttttcgaattcccgaaagcctatg 1434
Query: 250 attcttgctcttgc 263
|| ||||| |||||
Sbjct: 1435 atacttgcccttgc 1448
>ref|NM_122035.1| Arabidopsis thaliana transferase, transferring glycosyl groups
AT5G20280 mRNA, complete cds
Length = 3478
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 190 ccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatg 249
||||||||||| || |||||||| |||||||| ||||| || || |||| ||||| |||
Sbjct: 1441 ccagatccaccaatatgggctgagataatgcgtttcttttcgaattcccgaaagcctatg 1500
Query: 250 attcttgctcttgc 263
|| ||||| |||||
Sbjct: 1501 atacttgcccttgc 1514
>emb|AL091980.1|CNS00V8U Arabidopsis thaliana genome survey sequence T7 end of BAC T9A4 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 720
Score = 50.1 bits (25), Expect = 5e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaac 518
||||| ||||| |||||||||||||| |||||||| || ||||| || |||||
Sbjct: 274 aagcatcataaacaatctgaagttccagatatttaccgcttagcagccagaac 326
>gb|BH617837.1|BH617837 SALK_037958 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_037958, DNA sequence
Length = 445
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 92 aagcatcataaacaatctgaagttccagatatttaccgcttagc 49
>gb|CB185840.1|CB185840 EST01031 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC2-F4 similar
to sucrose-phosphate synthase-like protein, mRNA
sequence
Length = 530
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 497 aagcatcataaacaatctgaagttccagatatttaccgcttagc 454
>gb|AF096373.1|T9A4 Arabidopsis thaliana BAC T9A4
Length = 83922
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 83643 aagcatcataaacaatctgaagttccagatatttaccgcttagc 83600
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 2230463 aagcatcataaacaatctgaagttccagatatttaccgcttagc 2230506
>emb|CQ805456.1| Sequence 1867 from Patent WO2004035798
Length = 3252
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1831 aagcatcataaacaatctgaagttccagatatttaccgcttagc 1874
>dbj|AK175938.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL22-62-A14
Length = 3438
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1885 aagcatcataaacaatctgaagttccagatatttaccgcttagc 1928
>emb|AL049487.1|ATF28M11 Arabidopsis thaliana DNA chromosome 4, BAC clone F28M11 (ESSA project)
Length = 85907
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 44609 aagcatcataaacaatctgaagttccagatatttaccgcttagc 44652
>emb|AL161516.2|ATCHRIV28 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 28
Length = 198005
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 142970 aagcatcataaacaatctgaagttccagatatttaccgcttagc 143013
>dbj|AK220698.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL21-92-G10
Length = 3462
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1896 aagcatcataaacaatctgaagttccagatatttaccgcttagc 1939
>dbj|AK220923.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL22-49-M07
Length = 3438
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1885 aagcatcataaacaatctgaagttccagatatttaccgcttagc 1928
>dbj|AK221092.1| Arabidopsis thaliana mRNA for sucrose-phosphate synthase - like
protein, complete cds, clone: RAFL22-83-J09
Length = 3438
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1885 aagcatcataaacaatctgaagttccagatatttaccgcttagc 1928
>ref|NM_001036532.1| Arabidopsis thaliana unknown protein AT4G10120 transcript variant
AT4G10120.2 mRNA, complete cds
Length = 3468
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1896 aagcatcataaacaatctgaagttccagatatttaccgcttagc 1939
>ref|NM_117080.4| Arabidopsis thaliana transferase, transferring glycosyl groups
AT4G10120 transcript variant AT4G10120.1 mRNA, complete
cds
Length = 3457
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 1885 aagcatcataaacaatctgaagttccagatatttaccgcttagc 1928
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagc 509
||||| ||||| |||||||||||||| |||||||| || |||||
Sbjct: 6317732 aagcatcataaacaatctgaagttccagatatttaccgcttagc 6317775
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 333,553
Number of Sequences: 1013581
Number of extensions: 333553
Number of successful extensions: 24580
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23938
Number of HSP's gapped (non-prelim): 642
length of query: 683
length of database: 908,940,872
effective HSP length: 20
effective length of query: 663
effective length of database: 888,669,252
effective search space: 589187714076
effective search space used: 589187714076
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)