BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCM12h10.yg.2.1
         (339 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AX506240.1|  Sequence 935 from Patent WO0216655                40   0.23 
emb|AJ270058.1|  Arabidopsis thaliana DNA chromosome 4, shor...    40   0.23 
emb|AL161497.2|ATCHRIV9  Arabidopsis thaliana DNA chromosome...    40   0.23 
gb|AC005142.2|  Arabidopsis thaliana BAC T5L23 from chromoso...    40   0.23 
ref|NM_116593.3|  Arabidopsis thaliana ATGSL05 (GLUCAN SYNTH...    40   0.23 
gb|AF071527.1|  Arabidopsis thaliana BAC F9H3, from chromoso...    40   0.23 
ref|NC_003075.3|  Arabidopsis thaliana chromosome 4, complet...    40   0.23 

>emb|AX506240.1| Sequence 935 from Patent WO0216655
          Length = 5273

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 40   caaatggagccataatccatgataccaccagaaaccagct 79
            ||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 4536 caaatggggccattatccatgaaatcacaagaaaccagct 4497



>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
          Length = 3052119

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 40      caaatggagccataatccatgataccaccagaaaccagct 79
               ||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 1577271 caaatggggccattatccatgaaatcacaagaaaccagct 1577232



>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
          Length = 159629

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 40    caaatggagccataatccatgataccaccagaaaccagct 79
             ||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 39175 caaatggggccattatccatgaaatcacaagaaaccagct 39136



>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
             sequence
          Length = 116448

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 40    caaatggagccataatccatgataccaccagaaaccagct 79
             ||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 17898 caaatggggccattatccatgaaatcacaagaaaccagct 17859



>ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTHASE-LIKE 5);
            1,3-beta-glucan synthase/ transferase, transferring
            glycosyl groups AT4G03550 (ATGSL05) mRNA, complete cds
          Length = 5835

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 40   caaatggagccataatccatgataccaccagaaaccagct 79
            ||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 4771 caaatggggccattatccatgaaatcacaagaaaccagct 4732



>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
             complete sequence
          Length = 95519

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 40    caaatggagccataatccatgataccaccagaaaccagct 79
             ||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 13886 caaatggggccattatccatgaaatcacaagaaaccagct 13925



>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
          Length = 18585042

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 40      caaatggagccataatccatgataccaccagaaaccagct 79
               ||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 1578456 caaatggggccattatccatgaaatcacaagaaaccagct 1578417



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,653
Number of Sequences: 1013581
Number of extensions: 133653
Number of successful extensions: 8473
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8393
Number of HSP's gapped (non-prelim): 80
length of query: 339
length of database: 908,940,872
effective HSP length: 19
effective length of query: 320
effective length of database: 889,682,833
effective search space: 284698506560
effective search space used: 284698506560
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)