BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV825334.1|AV825334 AV825334 RAFL7 Arabidopsis thaliana ... 46 0.005
gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4 46 0.005
emb|AX059538.1| Sequence 271 from Patent WO0055325 46 0.005
gb|AY050990.1| Arabidopsis thaliana putative glucan synthas... 46 0.005
gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis tha... 46 0.005
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 46 0.005
emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosom... 46 0.005
ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHA... 46 0.005
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 46 0.005
gb|AV552411.1|AV552411 AV552411 Arabidopsis thaliana roots ... 40 0.34
emb|AX506240.1| Sequence 935 from Patent WO0216655 40 0.34
emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome... 40 0.34
gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromoso... 40 0.34
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 40 0.34
ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTH... 40 0.34
gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromoso... 40 0.34
>gb|AV825334.1|AV825334 AV825334 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-08-G20 5',
mRNA sequence
Length = 612
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 300 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 241
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 240 gttcccatggagaaagtgtagaa 218
>gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4
Length = 80196
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 11996 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 11937
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 11936 gttcccatggagaaagtgtagaa 11914
>emb|AX059538.1| Sequence 271 from Patent WO0055325
Length = 47489
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 2499 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 2440
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 2439 gttcccatggagaaagtgtagaa 2417
>gb|AY050990.1| Arabidopsis thaliana putative glucan synthase (At4g04970) mRNA,
partial cds
Length = 1764
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 300 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 241
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 240 gttcccatggagaaagtgtagaa 218
>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
complete sequence
Length = 183147
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 179588 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 179647
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 179648 gttcccatggagaaagtgtagaa 179670
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 2540324 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 2540265
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 2540264 gttcccatggagaaagtgtagaa 2540242
Score = 40.1 bits (20), Expect = 0.34
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 40 caaatggagccataatccatgataccaccagaaaccagct 79
||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 1577271 caaatggggccattatccatgaaatcacaagaaaccagct 1577232
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 1576907 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 1576860
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
Length = 198563
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 73521 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 73462
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 73461 gttcccatggagaaagtgtagaa 73439
>ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan
synthase/ transferase, transferring glycosyl groups
AT4G04970 (ATGSL1) mRNA, complete cds
Length = 5827
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 4379 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 4320
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 4319 gttcccatggagaaagtgtagaa 4297
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 46.1 bits (23), Expect = 0.005
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctctta 302
||||| ||||| || || || |||||||| || || ||||||||| |||||||| | |
Sbjct: 2541504 ccagtggcacgatacttggctccaccatggagtatagtccggccaaagtaatgggttcga 2541445
Query: 303 gttcccatggaaaatgtgtagaa 325
||||||||||| || ||||||||
Sbjct: 2541444 gttcccatggagaaagtgtagaa 2541422
Score = 40.1 bits (20), Expect = 0.34
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 40 caaatggagccataatccatgataccaccagaaaccagct 79
||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 1578456 caaatggggccattatccatgaaatcacaagaaaccagct 1578417
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 1578092 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 1578045
>gb|AV552411.1|AV552411 AV552411 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ29a05R 5', mRNA sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 450 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 403
>emb|AX506240.1| Sequence 935 from Patent WO0216655
Length = 5273
Score = 40.1 bits (20), Expect = 0.34
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 40 caaatggagccataatccatgataccaccagaaaccagct 79
||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 4536 caaatggggccattatccatgaaatcacaagaaaccagct 4497
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 4172 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 4125
>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
Length = 159629
Score = 40.1 bits (20), Expect = 0.34
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 40 caaatggagccataatccatgataccaccagaaaccagct 79
||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 39175 caaatggggccattatccatgaaatcacaagaaaccagct 39136
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 38811 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 38764
>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
sequence
Length = 116448
Score = 40.1 bits (20), Expect = 0.34
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 40 caaatggagccataatccatgataccaccagaaaccagct 79
||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 17898 caaatggggccattatccatgaaatcacaagaaaccagct 17859
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 17534 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 17487
>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
Length = 5281
Score = 40.1 bits (20), Expect = 0.34
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 220 tgtgctgcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattg 279
||||||| || |||||||| | |||||| || || || ||||||||||| ||||| || |
Sbjct: 4198 tgtgctgaaccacaaaacctctgccagttgctcgatactttgcaccaccgtgaagaatag 4139
Query: 280 tccggccatagtaatg 295
| || ||| |||||||
Sbjct: 4138 tacgtccaaagtaatg 4123
>ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTHASE-LIKE 5);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT4G03550 (ATGSL05) mRNA, complete cds
Length = 5835
Score = 40.1 bits (20), Expect = 0.34
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 40 caaatggagccataatccatgataccaccagaaaccagct 79
||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 4771 caaatggggccattatccatgaaatcacaagaaaccagct 4732
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 4407 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 4360
>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
complete sequence
Length = 95519
Score = 40.1 bits (20), Expect = 0.34
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 404 aatcattggcaatgcagtgaagaagccaagctgtatgatgaactgctg 451
||||||||||| |||||||| | || ||||| ||||||||||||||
Sbjct: 14250 aatcattggcagggcagtgaacagaccgagctgaatgatgaactgctg 14297
Score = 40.1 bits (20), Expect = 0.34
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 40 caaatggagccataatccatgataccaccagaaaccagct 79
||||||| ||||| |||||||| | ||| |||||||||||
Sbjct: 13886 caaatggggccattatccatgaaatcacaagaaaccagct 13925
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 242,356
Number of Sequences: 1013581
Number of extensions: 242356
Number of successful extensions: 17925
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17734
Number of HSP's gapped (non-prelim): 191
length of query: 480
length of database: 908,940,872
effective HSP length: 20
effective length of query: 460
effective length of database: 888,669,252
effective search space: 408787855920
effective search space used: 408787855920
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)