BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL28h07.yg.2.1
(277 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 88 9e-016
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 88 9e-016
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 88 9e-016
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 88 9e-016
emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cD... 80 2e-013
dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosom... 74 1e-011
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 74 1e-011
ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTH... 74 1e-011
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 74 1e-011
emb|AX651854.1| Sequence 720 from Patent WO03000898 66 3e-009
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 66 3e-009
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 66 3e-009
gb|CW845818.1|CW845818 GT12585.Ds3.10.21.2003.jx39.740 Arab... 64 1e-008
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 64 1e-008
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 64 1e-008
emb|AX412747.1| Sequence 511 from Patent WO0222675 64 1e-008
emb|AX441264.1| Sequence 18 from Patent EP1209228 64 1e-008
emb|AX508002.1| Sequence 2697 from Patent WO0216655 64 1e-008
dbj|BD181338.1| A stress-responsive promoter 64 1e-008
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 64 1e-008
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 64 1e-008
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 64 1e-008
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 64 1e-008
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 62 5e-008
emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome... 62 5e-008
ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTH... 62 5e-008
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 62 5e-008
gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis tha... 56 3e-006
ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTH... 56 3e-006
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 1e-005
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 54 1e-005
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 52 5e-005
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 52 5e-005
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 2e-004
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 50 2e-004
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 50 2e-004
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 50 2e-004
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 50 2e-004
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 50 2e-004
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 50 2e-004
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 50 2e-004
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 50 2e-004
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 50 2e-004
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 50 2e-004
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 48 8e-004
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 48 8e-004
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 48 8e-004
emb|AX505609.1| Sequence 304 from Patent WO0216655 48 8e-004
emb|AX507774.1| Sequence 2469 from Patent WO0216655 48 8e-004
gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseud... 46 0.003
gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudo... 46 0.003
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 46 0.003
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 46 0.003
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 46 0.003
gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J... 46 0.003
gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F... 46 0.003
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 46 0.003
emb|CS137270.1| Sequence 241 from Patent WO2005047516 46 0.003
tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase ... 46 0.003
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 46 0.003
ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synth... 46 0.003
emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.012
gb|CL475128.1|CL475128 SAIL_232_C06.v1 SAIL Collection Arab... 44 0.012
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.012
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 44 0.012
gb|CF772990.1|CF772990 AG_FSL_10G03 Arabidopsis ag-1 35S:AG... 44 0.012
emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mito... 44 0.012
emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35... 44 0.012
emb|AJ838785.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.048
gb|AQ963136.1|AQ963136 LERGJ63TF LERG Arabidopsis thaliana ... 40 0.19
gb|AQ963137.1|AQ963137 LERGJ63TR LERG Arabidopsis thaliana ... 40 0.19
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 40 0.19
gb|CB185800.1|CB185800 EST00727 Arabidopsis avirulent Pseud... 40 0.19
emb|AL772647.1| Arabidopsis thaliana transposon insertion S... 40 0.19
dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.19
emb|AJ836339.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.19
emb|AJ836963.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.19
emb|AJ837158.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.19
emb|AJ837256.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.19
emb|AJ840712.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.19
ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTH... 40 0.19
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 87.7 bits (44), Expect = 9e-016
Identities = 80/92 (86%)
Strand = Plus / Plus
Query: 54 atcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagca 113
|||||||| ||||| |||||||||||||| || ||||| || |||| || || ||||||
Sbjct: 90528 atcatcagctcaatacccttcacaaaatgactgcgcgagtagaatctgtagttttcagca 90587
Query: 114 aacttggcatggaacaccacaaatccacgccc 145
|| |||||||||||||||||||| ||||||||
Sbjct: 90588 aatttggcatggaacaccacaaaaccacgccc 90619
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 87.7 bits (44), Expect = 9e-016
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 54 atcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagca 113
|||||||| ||||| |||||||||||||| || ||||| || |||| || || ||||||
Sbjct: 1408 atcatcagctcaatacccttcacaaaatgactgcgcgagtagaatctgtagttttcagca 1349
Query: 114 aacttggcatggaacaccacaaatccacgccc 145
|| |||||||||||||||||||| ||||||||
Sbjct: 1348 aatttggcatggaacaccacaaaaccacgccc 1317
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 87.7 bits (44), Expect = 9e-016
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 54 atcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagca 113
|||||||| ||||| |||||||||||||| || ||||| || |||| || || ||||||
Sbjct: 5018 atcatcagctcaatacccttcacaaaatgactgcgcgagtagaatctgtagttttcagca 4959
Query: 114 aacttggcatggaacaccacaaatccacgccc 145
|| |||||||||||||||||||| ||||||||
Sbjct: 4958 aatttggcatggaacaccacaaaaccacgccc 4927
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 87.7 bits (44), Expect = 9e-016
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 54 atcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagca 113
|||||||| ||||| |||||||||||||| || ||||| || |||| || || ||||||
Sbjct: 13605959 atcatcagctcaatacccttcacaaaatgactgcgcgagtagaatctgtagttttcagca 13605900
Query: 114 aacttggcatggaacaccacaaatccacgccc 145
|| |||||||||||||||||||| ||||||||
Sbjct: 13605899 aatttggcatggaacaccacaaaaccacgccc 13605868
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 72 ttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacacc 131
|||||||| ||||||| |||||||| || || ||||| |||||||| | || ||||
Sbjct: 5712342 ttcacaaagtggcttctcgaatacattctgtagttctctgcaaacttctcgtgcttcacc 5712283
Query: 132 acaaatccacgccctgtagctct 154
||||| ||||||||||| |||||
Sbjct: 5712282 acaaacccacgccctgttgctct 5712260
>emb|BX819158.1|CNS0A8YL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB52ZD04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1385
Score = 79.8 bits (40), Expect = 2e-013
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 54 atcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagca 113
|||||||| ||||| |||||||||||||| || ||||| || |||| || || ||||||
Sbjct: 454 atcatcagctcaatacccttcacaaaatgactgcgcgagtagaatctgtagttttcagca 395
Query: 114 aacttggcatggaacaccacaaatccacgccc 145
| |||||||||||||||||||| ||||||||
Sbjct: 394 attttggcatggaacaccacaaaaccacgccc 363
>dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F5H8
Length = 70098
Score = 73.8 bits (37), Expect = 1e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 108 tcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattcagctcct 167
|||||||| |||||||||||||||||||||||||| || ||| |||| ||||| || |||
Sbjct: 62456 tcagcaaatttggcatggaacaccacaaatccacggccagtacctctgtattctgcgcct 62397
Query: 168 ccatg 172
|||||
Sbjct: 62396 ccatg 62392
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 73.8 bits (37), Expect = 1e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 108 tcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattcagctcct 167
|||||||| |||||||||||||||||||||||||| || ||| |||| ||||| || |||
Sbjct: 13466015 tcagcaaatttggcatggaacaccacaaatccacggccagtacctctgtattctgcgcct 13465956
Query: 168 ccatg 172
|||||
Sbjct: 13465955 ccatg 13465951
Score = 65.9 bits (33), Expect = 3e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 27 ccaaatatttcatacacaataagcaaaatcatcagttcaatgcccttcacaaaatggctt 86
|||||||||| |||||||| || | | ||||| ||||| |||||||||||||||||
Sbjct: 3924518 ccaaatatttgatacacaacgagtagcagcatcatttcaagtcccttcacaaaatggctc 3924577
Query: 87 cgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaatcc 139
|| ||||||| || ||||| |||||||| |||||||| || || ||||||||
Sbjct: 3924578 cgggaatacagtctgtaattatcagcaaatttggcatgaaagacgacaaatcc 3924630
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| || |||||||||||||| || |||||||| | || ||||| ||||||
Sbjct: 3924680 tagtagtgagtctttgtcccaagagagaacgtaaagaacactggcgccaactgaagctgc 3924739
Query: 249 at 250
||
Sbjct: 3924740 at 3924741
>ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTHASE-LIKE 9);
1,3-beta-glucan synthase AT5G36870 (ATGSL09) mRNA,
complete cds
Length = 5589
Score = 73.8 bits (37), Expect = 1e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 108 tcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattcagctcct 167
|||||||| |||||||||||||||||||||||||| || ||| |||| ||||| || |||
Sbjct: 4685 tcagcaaatttggcatggaacaccacaaatccacggccagtacctctgtattctgcgcct 4626
Query: 168 ccatg 172
|||||
Sbjct: 4625 ccatg 4621
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 73.8 bits (37), Expect = 1e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 108 tcagcaaacttggcatggaacaccacaaatccacgccctgtagctctatattcagctcct 167
|||||||| |||||||||||||||||||||||||| || ||| |||| ||||| || |||
Sbjct: 14549870 tcagcaaatttggcatggaacaccacaaatccacggccagtacctctgtattctgcgcct 14549811
Query: 168 ccatg 172
|||||
Sbjct: 14549810 ccatg 14549806
Score = 65.9 bits (33), Expect = 3e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 27 ccaaatatttcatacacaataagcaaaatcatcagttcaatgcccttcacaaaatggctt 86
|||||||||| |||||||| || | | ||||| ||||| |||||||||||||||||
Sbjct: 4111545 ccaaatatttgatacacaacgagtagcagcatcatttcaagtcccttcacaaaatggctc 4111604
Query: 87 cgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaatcc 139
|| ||||||| || ||||| |||||||| |||||||| || || ||||||||
Sbjct: 4111605 cgggaatacagtctgtaattatcagcaaatttggcatgaaagacgacaaatcc 4111657
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| || |||||||||||||| || |||||||| | || ||||| ||||||
Sbjct: 4111707 tagtagtgagtctttgtcccaagagagaacgtaaagaacactggcgccaactgaagctgc 4111766
Query: 249 at 250
||
Sbjct: 4111767 at 4111768
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 65.9 bits (33), Expect = 3e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 27 ccaaatatttcatacacaataagcaaaatcatcagttcaatgcccttcacaaaatggctt 86
|||||||||| |||||||| || | | ||||| ||||| |||||||||||||||||
Sbjct: 5168 ccaaatatttgatacacaacgagtagcagcatcatttcaagtcccttcacaaaatggctc 5109
Query: 87 cgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaatcc 139
|| ||||||| || ||||| |||||||| |||||||| || || ||||||||
Sbjct: 5108 cgggaatacagtctgtaattatcagcaaatttggcatgaaagacgacaaatcc 5056
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| || |||||||||||||| || |||||||| | || ||||| ||||||
Sbjct: 5006 tagtagtgagtctttgtcccaagagagaacgtaaagaacactggcgccaactgaagctgc 4947
Query: 249 at 250
||
Sbjct: 4946 at 4945
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 65.9 bits (33), Expect = 3e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 27 ccaaatatttcatacacaataagcaaaatcatcagttcaatgcccttcacaaaatggctt 86
|||||||||| |||||||| || | | ||||| ||||| |||||||||||||||||
Sbjct: 63359 ccaaatatttgatacacaacgagtagcagcatcatttcaagtcccttcacaaaatggctc 63418
Query: 87 cgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaatcc 139
|| ||||||| || ||||| |||||||| |||||||| || || ||||||||
Sbjct: 63419 cgggaatacagtctgtaattatcagcaaatttggcatgaaagacgacaaatcc 63471
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| || |||||||||||||| || |||||||| | || ||||| ||||||
Sbjct: 63521 tagtagtgagtctttgtcccaagagagaacgtaaagaacactggcgccaactgaagctgc 63580
Query: 249 at 250
||
Sbjct: 63581 at 63582
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 65.9 bits (33), Expect = 3e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 27 ccaaatatttcatacacaataagcaaaatcatcagttcaatgcccttcacaaaatggctt 86
|||||||||| |||||||| || | | ||||| ||||| |||||||||||||||||
Sbjct: 5310 ccaaatatttgatacacaacgagtagcagcatcatttcaagtcccttcacaaaatggctc 5251
Query: 87 cgcgaatacaatcgataattctcagcaaacttggcatggaacaccacaaatcc 139
|| ||||||| || ||||| |||||||| |||||||| || || ||||||||
Sbjct: 5250 cgggaatacagtctgtaattatcagcaaatttggcatgaaagacgacaaatcc 5198
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| || |||||||||||||| || |||||||| | || ||||| ||||||
Sbjct: 5148 tagtagtgagtctttgtcccaagagagaacgtaaagaacactggcgccaactgaagctgc 5089
Query: 249 at 250
||
Sbjct: 5088 at 5087
>gb|CW845818.1|CW845818 GT12585.Ds3.10.21.2003.jx39.740 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT12585, DNA sequence
Length = 740
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 56 catcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaa 115
||||| ||||| ||||||||||||||||| || ||||||| || ||||| ||||||||
Sbjct: 662 catcatttcaagtcccttcacaaaatggctccgggaatacagtctgtaattatcagcaaa 603
Query: 116 cttggcatggaacaccacaaatcc 139
|||||||| || || ||||||||
Sbjct: 602 tttggcatgaaagacgacaaatcc 579
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 189 tagtagtgagttttggtcccaagagagaatgtgaagaacacagatgctaactggagctgc 248
||||||||||| || |||||||||||||| || |||||||| | || ||||| ||||||
Sbjct: 529 tagtagtgagtctttgtcccaagagagaacgtaaagaacactggcgccaactgaagctgc 470
Query: 249 at 250
||
Sbjct: 469 at 468
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 1648877 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 1648936
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 1648937 aaatttcgcgtggaagaccacaaa 1648960
Score = 56.0 bits (28), Expect = 3e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| |||||||||||||||||||| | || ||| || || |||||||| ||||||||
Sbjct: 1987691 cccttaacaaaatggcttcgcgaatatagtctatagttttctgcaaacttcgcatggaaa 1987632
Query: 129 accacaaa 136
|| |||||
Sbjct: 1987631 acaacaaa 1987624
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 5001 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 4942
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 4941 aaatttcgcgtggaagaccacaaa 4918
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 4716 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 4657
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 4656 aaatttcgcgtggaagaccacaaa 4633
>emb|AX441264.1| Sequence 18 from Patent EP1209228
Length = 2000
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 233 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 174
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 173 aaatttcgcgtggaagaccacaaa 150
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 4716 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 4657
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 4656 aaatttcgcgtggaagaccacaaa 4633
>dbj|BD181338.1| A stress-responsive promoter
Length = 2000
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 233 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 174
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 173 aaatttcgcgtggaagaccacaaa 150
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 30525 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 30584
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 30585 aaatttcgcgtggaagaccacaaa 30608
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 81074 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 81133
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 81134 aaatttcgcgtggaagaccacaaa 81157
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 5001 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 4942
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 4941 aaatttcgcgtggaagaccacaaa 4918
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 63.9 bits (32), Expect = 1e-008
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 53 aatcatcagttcaatgcccttcacaaaatggcttcgcgaatacaatcgataattctcagc 112
|||||| |||||||||||||||||||| || || || ||||| || | ||| ||||||||
Sbjct: 1649000 aatcataagttcaatgcccttcacaaagtgactacgggaatagaacctatagttctcagc 1649059
Query: 113 aaacttggcatggaacaccacaaa 136
||| || || ||||| ||||||||
Sbjct: 1649060 aaatttcgcgtggaagaccacaaa 1649083
Score = 56.0 bits (28), Expect = 3e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| |||||||||||||||||||| | || ||| || || |||||||| ||||||||
Sbjct: 1987844 cccttaacaaaatggcttcgcgaatatagtctatagttttctgcaaacttcgcatggaaa 1987785
Query: 129 accacaaa 136
|| |||||
Sbjct: 1987784 acaacaaa 1987777
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 61.9 bits (31), Expect = 5e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||||||||| || |||| ||||||||| | || ||||| |||||||||||||||||
Sbjct: 21811262 cccttcacaaagtgacttctcgaatacaacctgtagttctccgcaaacttggcatggaaa 21811203
Query: 129 accacaaatccacgccctgtagctctatatt 159
|| ||||| ||||| || || | ||||||||
Sbjct: 21811202 acaacaaacccacggcccgtcggtctatatt 21811172
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 78 aaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacaccac 133
||||||||||| ||||| |||| ||||| ||| || |||||||||||||||||
Sbjct: 4891485 aaatggcttcgagaatataatctgtaattttcactgaagttggcatggaacaccac 4891430
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
Length = 89517
Score = 61.9 bits (31), Expect = 5e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||||||||| || |||| ||||||||| | || ||||| |||||||||||||||||
Sbjct: 65948 cccttcacaaagtgacttctcgaatacaacctgtagttctccgcaaacttggcatggaaa 65889
Query: 129 accacaaatccacgccctgtagctctatatt 159
|| ||||| ||||| || || | ||||||||
Sbjct: 65888 acaacaaacccacggcccgtcggtctatatt 65858
>ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTHASE-LIKE 11);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G59100 (ATGSL11) mRNA, complete cds
Length = 5805
Score = 61.9 bits (31), Expect = 5e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||||||||| || |||| ||||||||| | || ||||| |||||||||||||||||
Sbjct: 4934 cccttcacaaagtgacttctcgaatacaacctgtagttctccgcaaacttggcatggaaa 4875
Query: 129 accacaaatccacgccctgtagctctatatt 159
|| ||||| ||||| || || | ||||||||
Sbjct: 4874 acaacaaacccacggcccgtcggtctatatt 4844
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 61.9 bits (31), Expect = 5e-008
Identities = 76/91 (83%)
Strand = Plus / Minus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||||||||| || |||| ||||||||| | || ||||| |||||||||||||||||
Sbjct: 21863694 cccttcacaaagtgacttctcgaatacaacctgtagttctccgcaaacttggcatggaaa 21863635
Query: 129 accacaaatccacgccctgtagctctatatt 159
|| ||||| ||||| || || | ||||||||
Sbjct: 21863634 acaacaaacccacggcccgtcggtctatatt 21863604
Score = 40.1 bits (20), Expect = 0.19
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 78 aaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaacaccac 133
||||||||||| ||||| |||| ||||| ||| || |||||||||||||||||
Sbjct: 4901589 aaatggcttcgagaatataatctgtaattttcactgaagttggcatggaacaccac 4901534
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
complete sequence
Length = 93724
Score = 56.0 bits (28), Expect = 3e-006
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| |||||||||||||||||||| | || ||| || || |||||||| ||||||||
Sbjct: 66165 cccttaacaaaatggcttcgcgaatatagtctatagttttctgcaaacttcgcatggaaa 66224
Query: 129 accacaaa 136
|| |||||
Sbjct: 66225 acaacaaa 66232
>ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTHASE-LIKE 7);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT1G06490 (ATGSL07) mRNA, complete cds
Length = 5802
Score = 56.0 bits (28), Expect = 3e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 69 cccttcacaaaatggcttcgcgaatacaatcgataattctcagcaaacttggcatggaac 128
||||| |||||||||||||||||||| | || ||| || || |||||||| ||||||||
Sbjct: 4931 cccttaacaaaatggcttcgcgaatatagtctatagttttctgcaaacttcgcatggaaa 4872
Query: 129 accacaaa 136
|| |||||
Sbjct: 4871 acaacaaa 4864
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||||
Sbjct: 53 aagtacctgcccgggcggccgctcgaa 27
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 54.0 bits (27), Expect = 1e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 251 aagtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||||
Sbjct: 327 aagtacctgcccgggcggccgctcgaa 353
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcgaa 277
||||||||||||||||||||||||||
Sbjct: 381 agtacctgcccgggcggccgctcgaa 406
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcgaa 277
||||||||||||||||||||||||||
Sbjct: 331 agtacctgcccgggcggccgctcgaa 356
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 52 gtacctgcccgggcggccgctcgaa 28
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 239 gtacctgcccgggcggccgctcgaa 263
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 304 gtacctgcccgggcggccgctcgaa 328
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 81 gtacctgcccgggcggccgctcgaa 57
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 84 gtacctgcccgggcggccgctcgaa 60
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 59 gtacctgcccgggcggccgctcgaa 35
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 366 gtacctgcccgggcggccgctcgaa 390
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 397 gtacctgcccgggcggccgctcgaa 421
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 278 gtacctgcccgggcggccgctcgaa 302
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||||
Sbjct: 247 gtacctgcccgggcggccgctcgaa 271
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 252 agtacctgcccgggcggccgctcga 276
|||||||||||||||||||||||||
Sbjct: 122 agtacctgcccgggcggccgctcga 146
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||
Sbjct: 33 gtacctgcccgggcggccgctcga 10
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||
Sbjct: 213 gtacctgcccgggcggccgctcga 236
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||
Sbjct: 452 gtacctgcccgggcggccgctcga 475
>emb|AX505609.1| Sequence 304 from Patent WO0216655
Length = 414
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 254 tacctgcccgggcggccgctcgaa 277
||||||||||||||||||||||||
Sbjct: 29 tacctgcccgggcggccgctcgaa 6
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 48.1 bits (24), Expect = 8e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 253 gtacctgcccgggcggccgctcga 276
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-G9 similar
to ARF GAP-like zinc finger-containing protein (ZIGA2),
mRNA sequence
Length = 746
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 255 acctgcccgggcggccgctcgaa 277
|||||||||||||||||||||||
Sbjct: 69 acctgcccgggcggccgctcgaa 47
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,866
Number of Sequences: 1013581
Number of extensions: 140866
Number of successful extensions: 42616
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 80
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 39899
Number of HSP's gapped (non-prelim): 2723
length of query: 277
length of database: 908,940,872
effective HSP length: 19
effective length of query: 258
effective length of database: 889,682,833
effective search space: 229538170914
effective search space used: 229538170914
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)