BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCK30g08.yg.2.1
         (164 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL486704.1|CL486704  SAIL_440_E05.v1 SAIL Collection Arab...    38   0.42 
gb|CB074411.1|CB074411  EST00927 Virulent Peronospora parasi...    38   0.42 
gb|AC006136.4|  Arabidopsis thaliana chromosome 2 clone T13H...    38   0.42 
ref|NC_003071.3|  Arabidopsis thaliana chromosome 2, complet...    38   0.42 

>gb|CL486704.1|CL486704 SAIL_440_E05.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_440_E05.v1, DNA sequence
          Length = 901

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 24  cacagaaaaatttcctctt 42
           |||||||||||||||||||
Sbjct: 658 cacagaaaaatttcctctt 640



>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
           Forward-Subtracted Library Arabidopsis thaliana cDNA
           clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
          Length = 421

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                      
Query: 139 aggtacctgcc-gggcggccgctcgaa 164
           ||||||||||| |||||||||||||||
Sbjct: 395 aggtacctgcccgggcggccgctcgaa 421



>gb|AC006136.4| Arabidopsis thaliana chromosome 2 clone T13H18 map GPC6, complete
             sequence
          Length = 82098

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    gcaaaacaaagctcgttgt 80
             |||||||||||||||||||
Sbjct: 60999 gcaaaacaaagctcgttgt 61017



>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
          Length = 19705359

 Score = 38.2 bits (19), Expect = 0.42
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 62      gcaaaacaaagctcgttgt 80
               |||||||||||||||||||
Sbjct: 4471605 gcaaaacaaagctcgttgt 4471623



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 88,708
Number of Sequences: 1013581
Number of extensions: 88708
Number of successful extensions: 23631
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 23487
Number of HSP's gapped (non-prelim): 146
length of query: 164
length of database: 908,940,872
effective HSP length: 19
effective length of query: 145
effective length of database: 889,682,833
effective search space: 129004010785
effective search space used: 129004010785
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)