BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCI2h07.yg.2.1
(286 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV560162.1|AV560162 AV560162 Arabidopsis thaliana green ... 42 0.050
gb|AV544917.1|AV544917 AV544917 Arabidopsis thaliana roots ... 40 0.20
gb|AV563704.1|AV563704 AV563704 Arabidopsis thaliana green ... 40 0.20
gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R5... 40 0.20
gb|BT006111.1| Arabidopsis thaliana clone U50150 putative c... 40 0.20
emb|BX833432.1|CNS09Z0L Arabidopsis thaliana Full-length cD... 40 0.20
dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.20
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.20
ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNT... 40 0.20
ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G4... 40 0.20
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.20
>gb|AV560162.1|AV560162 AV560162 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ130c09F 3', mRNA sequence
Length = 484
Score = 42.1 bits (21), Expect = 0.050
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 148 cattcaaatggacgacccttctgatacctccgacaac 184
||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 427 cattcaaatggacaaccctgctgatccctccaacaac 391
>gb|AV544917.1|AV544917 AV544917 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ63c06F 3', mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 439 aaatggacaacccttctcatccctccgacaac 408
>gb|AV563704.1|AV563704 AV563704 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191g11F 3', mRNA sequence
Length = 575
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 491 aaatggacaacccttctcatccctccgacaac 460
>gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R50150) putative cellulose
synthase catalytic subunit (At5g44030) mRNA, complete cds
Length = 3377
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 2898 aaatggacaacccttctcatccctccgacaac 2929
>gb|BT006111.1| Arabidopsis thaliana clone U50150 putative cellulose synthase
catalytic subunit (At5g44030) mRNA, complete cds
Length = 3181
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 2827 aaatggacaacccttctcatccctccgacaac 2858
>emb|BX833432.1|CNS09Z0L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL54ZH10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 838
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 359 aaatggacaacccttctcatccctccgacaac 390
>dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRH10
Length = 71522
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 49335 aaatggacaacccttctcatccctccgacaac 49366
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 16111962 aaatggacaacccttctcatccctccgacaac 16111993
>ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNTHASE 4); transferase,
transferring glycosyl groups AT5G44030 (CESA4) mRNA,
complete cds
Length = 3745
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 2895 aaatggacaacccttctcatccctccgacaac 2926
>ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G44040 mRNA, complete cds
Length = 2278
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 2072 aaatggacaacccttctcatccctccgacaac 2041
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 153 aaatggacgacccttctgatacctccgacaac 184
|||||||| |||||||| || |||||||||||
Sbjct: 17736468 aaatggacaacccttctcatccctccgacaac 17736499
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,093
Number of Sequences: 1013581
Number of extensions: 87093
Number of successful extensions: 6242
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6178
Number of HSP's gapped (non-prelim): 64
length of query: 286
length of database: 908,940,872
effective HSP length: 19
effective length of query: 267
effective length of database: 889,682,833
effective search space: 237545316411
effective search space used: 237545316411
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)