BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH10g11.yg.2.1
(632 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AX506240.1| Sequence 935 from Patent WO0216655 129 6e-028
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 129 6e-028
emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome... 129 6e-028
gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromoso... 129 6e-028
ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTH... 129 6e-028
gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromoso... 129 6e-028
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 129 6e-028
gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4 92 1e-016
emb|AX059538.1| Sequence 271 from Patent WO0055325 92 1e-016
gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis tha... 92 1e-016
emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosom... 92 1e-016
ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHA... 92 1e-016
emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey ... 86 8e-015
ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTH... 86 8e-015
emb|AL094618.1|CNS00XA4 Arabidopsis thaliana genome survey ... 72 1e-010
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 60 5e-007
gb|CL478670.1|CL478670 SAIL_294_D06.v1 SAIL Collection Arab... 58 2e-006
ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTH... 56 8e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 54 3e-005
emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome... 54 3e-005
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 54 3e-005
tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase ... 52 1e-004
ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synth... 52 1e-004
gb|CW841227.1|CW841227 ET11006.Ds3.04.02.2003.jw89.611 Arab... 50 5e-004
gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J... 50 5e-004
gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F... 50 5e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 50 5e-004
gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arab... 46 0.007
emb|AX651854.1| Sequence 720 from Patent WO03000898 46 0.007
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 46 0.007
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 46 0.007
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 46 0.007
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 46 0.007
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.029
gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis tha... 44 0.029
ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTH... 44 0.029
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.029
gb|BE038607.1|BE038607 AB01G09 AB Arabidopsis thaliana cDNA... 40 0.45
gb|AV831087.1|AV831087 AV831087 RAFL9 Arabidopsis thaliana ... 40 0.45
gb|AU237027.1|AU237027 AU237027 RAFL15 Arabidopsis thaliana... 40 0.45
gb|CB260213.1|CB260213 87-E011178-013-009-N21-T7R MPIZ-ADIS... 40 0.45
gb|BX837456.1|BX837456 BX837456 Arabidopsis thaliana Adult ... 40 0.45
gb|AY099734.1| Arabidopsis thaliana putative glucan synthas... 40 0.45
gb|BT004098.1| Arabidopsis thaliana clone RAFL15-43-F21 (R2... 40 0.45
emb|AX651726.1| Sequence 560 from Patent WO03000898 40 0.45
gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M... 40 0.45
emb|BX820913.1|CNS0A7YS Arabidopsis thaliana Full-length cD... 40 0.45
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 40 0.45
emb|CQ805766.1| Sequence 2177 from Patent WO2004035798 40 0.45
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 40 0.45
ref|NM_129333.3| Arabidopsis thaliana oxidoreductase AT2G37... 40 0.45
ref|NM_001036428.1| Arabidopsis thaliana oxidoreductase AT2... 40 0.45
>emb|AX506240.1| Sequence 935 from Patent WO0216655
Length = 5273
Score = 129 bits (65), Expect = 6e-028
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 89 tcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacgc 148
||||| ||||| ||||||||||||||||||||||| || ||||| | || |||||||||
Sbjct: 3694 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 3635
Query: 149 tgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaact 208
|| || ||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct: 3634 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 3575
Query: 209 gaacccgtgaaga 221
|| ||||||||||
Sbjct: 3574 gatcccgtgaaga 3562
Score = 87.7 bits (44), Expect = 2e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttgaact 349
||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 3493 tttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaatggtctgaaca 3434
Query: 350 gcatcgccccttgtgaagatgagtgcatgattctgattttctggctttccttcgcc 405
||||| || | || ||||| | |||||||||||| || ||||||||||| |||||
Sbjct: 3433 gcatcaccacgggtaaagatcattgcatgattctggttctctggctttccctcgcc 3378
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 129 bits (65), Expect = 6e-028
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 89 tcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacgc 148
||||| ||||| ||||||||||||||||||||||| || ||||| | || |||||||||
Sbjct: 1576249 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 1576190
Query: 149 tgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaact 208
|| || ||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct: 1576189 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 1576130
Query: 209 gaacccgtgaaga 221
|| ||||||||||
Sbjct: 1576129 gatcccgtgaaga 1576117
Score = 91.7 bits (46), Expect = 1e-016
Identities = 319/410 (77%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 2539772 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 2539713
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 2539712 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 2539653
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 2539652 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 2539593
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 2539592 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 2539533
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 2539532 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 2539473
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 2539472 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 2539413
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaa 414
||||| || ||||| || || |||||||| ||||| || |||| ||||||
Sbjct: 2539412 aagattagagcatggttttggttttctggttttccctcaccaagcttcaa 2539363
Score = 87.7 bits (44), Expect = 2e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttgaact 349
||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 1576048 tttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaatggtctgaaca 1575989
Query: 350 gcatcgccccttgtgaagatgagtgcatgattctgattttctggctttccttcgcc 405
||||| || | || ||||| | |||||||||||| || ||||||||||| |||||
Sbjct: 1575988 gcatcaccacgggtaaagatcattgcatgattctggttctctggctttccctcgcc 1575933
>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
Length = 159629
Score = 129 bits (65), Expect = 6e-028
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 89 tcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacgc 148
||||| ||||| ||||||||||||||||||||||| || ||||| | || |||||||||
Sbjct: 38153 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 38094
Query: 149 tgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaact 208
|| || ||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct: 38093 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 38034
Query: 209 gaacccgtgaaga 221
|| ||||||||||
Sbjct: 38033 gatcccgtgaaga 38021
Score = 87.7 bits (44), Expect = 2e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttgaact 349
||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 37952 tttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaatggtctgaaca 37893
Query: 350 gcatcgccccttgtgaagatgagtgcatgattctgattttctggctttccttcgcc 405
||||| || | || ||||| | |||||||||||| || ||||||||||| |||||
Sbjct: 37892 gcatcaccacgggtaaagatcattgcatgattctggttctctggctttccctcgcc 37837
>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
sequence
Length = 116448
Score = 129 bits (65), Expect = 6e-028
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 89 tcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacgc 148
||||| ||||| ||||||||||||||||||||||| || ||||| | || |||||||||
Sbjct: 16876 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 16817
Query: 149 tgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaact 208
|| || ||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct: 16816 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 16757
Query: 209 gaacccgtgaaga 221
|| ||||||||||
Sbjct: 16756 gatcccgtgaaga 16744
Score = 87.7 bits (44), Expect = 2e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttgaact 349
||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 16675 tttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaatggtctgaaca 16616
Query: 350 gcatcgccccttgtgaagatgagtgcatgattctgattttctggctttccttcgcc 405
||||| || | || ||||| | |||||||||||| || ||||||||||| |||||
Sbjct: 16615 gcatcaccacgggtaaagatcattgcatgattctggttctctggctttccctcgcc 16560
>ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTHASE-LIKE 5);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT4G03550 (ATGSL05) mRNA, complete cds
Length = 5835
Score = 129 bits (65), Expect = 6e-028
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 89 tcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacgc 148
||||| ||||| ||||||||||||||||||||||| || ||||| | || |||||||||
Sbjct: 3929 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 3870
Query: 149 tgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaact 208
|| || ||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct: 3869 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 3810
Query: 209 gaacccgtgaaga 221
|| ||||||||||
Sbjct: 3809 gatcccgtgaaga 3797
Score = 87.7 bits (44), Expect = 2e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttgaact 349
||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 3728 tttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaatggtctgaaca 3669
Query: 350 gcatcgccccttgtgaagatgagtgcatgattctgattttctggctttccttcgcc 405
||||| || | || ||||| | |||||||||||| || ||||||||||| |||||
Sbjct: 3668 gcatcaccacgggtaaagatcattgcatgattctggttctctggctttccctcgcc 3613
>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
complete sequence
Length = 95519
Score = 129 bits (65), Expect = 6e-028
Identities = 116/133 (87%)
Strand = Plus / Plus
Query: 89 tcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacgc 148
||||| ||||| ||||||||||||||||||||||| || ||||| | || |||||||||
Sbjct: 14908 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 14967
Query: 149 tgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaact 208
|| || ||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct: 14968 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 15027
Query: 209 gaacccgtgaaga 221
|| ||||||||||
Sbjct: 15028 gatcccgtgaaga 15040
Score = 87.7 bits (44), Expect = 2e-015
Identities = 98/116 (84%)
Strand = Plus / Plus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttgaact 349
||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 15109 tttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaatggtctgaaca 15168
Query: 350 gcatcgccccttgtgaagatgagtgcatgattctgattttctggctttccttcgcc 405
||||| || | || ||||| | |||||||||||| || ||||||||||| |||||
Sbjct: 15169 gcatcaccacgggtaaagatcattgcatgattctggttctctggctttccctcgcc 15224
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 129 bits (65), Expect = 6e-028
Identities = 116/133 (87%)
Strand = Plus / Minus
Query: 89 tcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacgc 148
||||| ||||| ||||||||||||||||||||||| || ||||| | || |||||||||
Sbjct: 1577434 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 1577375
Query: 149 tgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaact 208
|| || ||||||||||||||||||||||| |||||||||||||| || || || || |||
Sbjct: 1577374 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 1577315
Query: 209 gaacccgtgaaga 221
|| ||||||||||
Sbjct: 1577314 gatcccgtgaaga 1577302
Score = 91.7 bits (46), Expect = 1e-016
Identities = 319/410 (77%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 2540952 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 2540893
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 2540892 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 2540833
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 2540832 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 2540773
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 2540772 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 2540713
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 2540712 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 2540653
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 2540652 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 2540593
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaa 414
||||| || ||||| || || |||||||| ||||| || |||| ||||||
Sbjct: 2540592 aagattagagcatggttttggttttctggttttccctcaccaagcttcaa 2540543
Score = 87.7 bits (44), Expect = 2e-015
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttgaact 349
||||||||||| |||||||| ||||| || ||||||||||||||||||| || |||||
Sbjct: 1577233 tttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaatggtctgaaca 1577174
Query: 350 gcatcgccccttgtgaagatgagtgcatgattctgattttctggctttccttcgcc 405
||||| || | || ||||| | |||||||||||| || ||||||||||| |||||
Sbjct: 1577173 gcatcaccacgggtaaagatcattgcatgattctggttctctggctttccctcgcc 1577118
>gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4
Length = 80196
Score = 91.7 bits (46), Expect = 1e-016
Identities = 319/410 (77%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 11444 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 11385
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 11384 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 11325
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 11324 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 11265
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 11264 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 11205
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 11204 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 11145
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 11144 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 11085
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaa 414
||||| || ||||| || || |||||||| ||||| || |||| ||||||
Sbjct: 11084 aagattagagcatggttttggttttctggttttccctcaccaagcttcaa 11035
>emb|AX059538.1| Sequence 271 from Patent WO0055325
Length = 47489
Score = 91.7 bits (46), Expect = 1e-016
Identities = 319/410 (77%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 1947 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 1888
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 1887 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 1828
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 1827 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 1768
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 1767 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 1708
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 1707 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 1648
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 1647 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 1588
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaa 414
||||| || ||||| || || |||||||| ||||| || |||| ||||||
Sbjct: 1587 aagattagagcatggttttggttttctggttttccctcaccaagcttcaa 1538
>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
complete sequence
Length = 183147
Score = 91.7 bits (46), Expect = 1e-016
Identities = 319/410 (77%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 180140 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 180199
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 180200 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 180259
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 180260 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 180319
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 180320 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 180379
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 180380 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 180439
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 180440 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 180499
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaa 414
||||| || ||||| || || |||||||| ||||| || |||| ||||||
Sbjct: 180500 aagattagagcatggttttggttttctggttttccctcaccaagcttcaa 180549
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
Length = 198563
Score = 91.7 bits (46), Expect = 1e-016
Identities = 319/410 (77%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 72969 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 72910
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 72909 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 72850
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 72849 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 72790
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 72789 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 72730
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 72729 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 72670
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 72669 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 72610
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaa 414
||||| || ||||| || || |||||||| ||||| || |||| ||||||
Sbjct: 72609 aagattagagcatggttttggttttctggttttccctcaccaagcttcaa 72560
>ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan
synthase/ transferase, transferring glycosyl groups
AT4G04970 (ATGSL1) mRNA, complete cds
Length = 5827
Score = 91.7 bits (46), Expect = 1e-016
Identities = 319/410 (77%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 3827 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 3768
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 3767 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 3708
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 3707 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 3648
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 3647 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 3588
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 3587 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 3528
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 3527 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 3468
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaa 414
||||| || ||||| || || |||||||| ||||| || |||| ||||||
Sbjct: 3467 aagattagagcatggttttggttttctggttttccctcaccaagcttcaa 3418
>emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey sequence T7 end of BAC T13I8 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 85.7 bits (43), Expect = 8e-015
Identities = 307/395 (77%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | |||||| ||||| || || |||
Sbjct: 401 ttgaatccagcaaatatatcctcactgatgtttataactcttgaggctttgctaattcca 342
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
|| || || |||||||| |||||||| ||||| || || ||||||||||| || |||
Sbjct: 341 ccccgaggcacaaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcact 282
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| ||||| | || ||||||||||| || | || ||||||||||| ||||| || |||
Sbjct: 281 ttcagtgggttggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggac 222
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| ||||| || || ||||| |||||||| ||||| || | || || || ||||||||
Sbjct: 221 ataaaccatgcgagtgaagatactgaaccagtgaaaactttctcacggactccaagaata 162
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
||||||| | ||| ||||| ||| ||||| ||| | | ||| |||||||| |||
Sbjct: 161 gtaggcttcctaatgccatagtaagtcttgaatgattccaacaagttcctcatcttaaga 102
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
|| || ||||| | ||| ||||| ||||||||||| || |||| ||||| || | |||
Sbjct: 101 gcctcctcaaaatggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgta 42
Query: 365 aagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || || |||||||| |||||
Sbjct: 41 aagattagagcatggttttggttttctggttttcc 7
>ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTHASE-LIKE 11);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G59100 (ATGSL11) mRNA, complete cds
Length = 5805
Score = 85.7 bits (43), Expect = 8e-015
Identities = 91/107 (85%)
Strand = Plus / Minus
Query: 304 agcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgt 363
||||||||||||||| |||||||| |||||||| |||||||| | ||| || || | |||
Sbjct: 3999 agcttcttcaaagtaattgtcttgattcatatctatagtttgtagtgcttcaccacgtgt 3940
Query: 364 gaagatgagtgcatgattctgattttctggctttccttcgccaatct 410
|| |||| |||||||| |||||||| ||||||||||| |||||||
Sbjct: 3939 aaatatgatagcatgattttgattttcaggctttccttcaccaatct 3893
>emb|AL094618.1|CNS00XA4 Arabidopsis thaliana genome survey sequence T7 end of BAC T13I7 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 425
Score = 71.9 bits (36), Expect = 1e-010
Identities = 252/324 (77%)
Strand = Plus / Minus
Query: 76 aaaccaaagacgatcaaaaacatctgggtggccataatgcattctgactttaagtggatc 135
|||||||| |||||||| ||||| || || ||||||||||| || ||||| ||||| |
Sbjct: 330 aaaccaaaaccgatcaaatacatccggatgaccataatgcatcctcactttcagtgggtt 271
Query: 136 agccagaacacgctgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagc 195
|| ||||||||||| || | || ||||||||||| ||||| || ||||| ||||| ||
Sbjct: 270 ggcaagaacacgctgtcctaaggttacaaaacttgtttcctgagcggacataaaccatgc 211
Query: 196 aagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaattttaggcttgcg 255
|| ||||| |||||||| ||||| || | || || || |||||||| ||||||| |
Sbjct: 210 gagtgaagatactgaaccagtgaaaactttctcacggactccaagaatagtaggcttcct 151
Query: 256 aattccataataacgattgaactcttctagtaggtttctcatctttagagcttcttcaaa 315
||| ||||| ||| ||||| ||| | | ||| |||||||| ||||| || |||||
Sbjct: 150 aatgccatagtaagtcttgaatgattccaacaagttcctcatcttaagagcctcctcaaa 91
Query: 316 gtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtgaagatgagtgc 375
| ||| ||||| ||||||||||| || |||| ||||| || | ||| ||||| || ||
Sbjct: 90 atggttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagc 31
Query: 376 atgattctgattttctggctttcc 399
||| || || |||||||| |||||
Sbjct: 30 atggttttggttttctggttttcc 7
>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds
Length = 5950
Score = 60.0 bits (30), Expect = 5e-007
Identities = 111/138 (80%)
Strand = Plus / Minus
Query: 271 attgaactcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggtt 330
|||||||||||| || || |||||||| || || |||||||| ||||| | ||| || ||
Sbjct: 4155 attgaactcttccagcagatttctcattttaagtgcttcttccaagtaatggtcctgatt 4096
Query: 331 catatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttc 390
||| ||||||| || | || || || || || || ||||| |||||||||||||||||
Sbjct: 4095 catgtcaatagcctggagagcttctcctctagtaaaaatgagagcatgattctgattttc 4036
Query: 391 tggctttccttcgccaat 408
|| |||||||| |||||
Sbjct: 4035 gggttttccttctccaat 4018
>gb|CL478670.1|CL478670 SAIL_294_D06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_294_D06.v1, DNA sequence
Length = 961
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 291 ttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||| |||||||| ||||| || |||||||||||||||||||
Sbjct: 94 ttctcatcttgagagcttcctcaaaataactgtcttggttcatatcaat 142
>ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTHASE-LIKE 10);
1,3-beta-glucan synthase AT3G07160 (ATGSL10) mRNA,
complete cds
Length = 5981
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 290 tttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaatagtttg 345
||||||||||||| ||||||||||| || || || || |||||||||||||||||
Sbjct: 4025 tttctcatctttaaggcttcttcaaaataattatcctgattcatatcaatagtttg 3970
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 4 gttgaaaccagcaaaaatgtcctcactaatgttgat 39
||||||||||||||| || || |||||||| |||||
Sbjct: 4311 gttgaaaccagcaaatatatcttcactaatattgat 4276
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 54.0 bits (27), Expect = 3e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 324 cttggttcatatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattct 383
|||| |||||||| |||||||| | ||| || || | ||| || |||| |||||||| |
Sbjct: 21809740 cttgattcatatctatagtttgtagtgcttcaccacgtgtaaatatgatagcatgatttt 21809681
Query: 384 gattttctggctttccttcgccaatct 410
||||||| ||||||||||| |||||||
Sbjct: 21809680 gattttcaggctttccttcaccaatct 21809654
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
Length = 89517
Score = 54.0 bits (27), Expect = 3e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 324 cttggttcatatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattct 383
|||| |||||||| |||||||| | ||| || || | ||| || |||| |||||||| |
Sbjct: 64426 cttgattcatatctatagtttgtagtgcttcaccacgtgtaaatatgatagcatgatttt 64367
Query: 384 gattttctggctttccttcgccaatct 410
||||||| ||||||||||| |||||||
Sbjct: 64366 gattttcaggctttccttcaccaatct 64340
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 54.0 bits (27), Expect = 3e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 324 cttggttcatatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattct 383
|||| |||||||| |||||||| | ||| || || | ||| || |||| |||||||| |
Sbjct: 21862172 cttgattcatatctatagtttgtagtgcttcaccacgtgtaaatatgatagcatgatttt 21862113
Query: 384 gattttctggctttccttcgccaatct 410
||||||| ||||||||||| |||||||
Sbjct: 21862112 gattttcaggctttccttcaccaatct 21862086
>tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase (LAP1) mRNA, complete cds
Length = 5772
Score = 52.0 bits (26), Expect = 1e-004
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 271 attgaactcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggtt 330
|||||||||||| || || || ||||| || || |||||||| ||||| | ||| || ||
Sbjct: 4002 attgaactcttccagcagattcctcattttaagtgcttcttccaagtaatggtcctgatt 3943
Query: 331 catatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttc 390
||| ||||||| || | || || || || || || ||||| |||||||||||||||||
Sbjct: 3942 catgtcaatagcctggagagcttctcctctagtaaaaatgagagcatgattctgattttc 3883
Query: 391 tggctttccttcgccaat 408
|| |||||||| |||||
Sbjct: 3882 gggttttccttctccaat 3865
>ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase AT2G13680 mRNA,
complete cds
Length = 5772
Score = 52.0 bits (26), Expect = 1e-004
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 271 attgaactcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggtt 330
|||||||||||| || || || ||||| || || |||||||| ||||| | ||| || ||
Sbjct: 4002 attgaactcttccagcagattcctcattttaagtgcttcttccaagtaatggtcctgatt 3943
Query: 331 catatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttc 390
||| ||||||| || | || || || || || || ||||| |||||||||||||||||
Sbjct: 3942 catgtcaatagcctggagagcttctcctctagtaaaaatgagagcatgattctgattttc 3883
Query: 391 tggctttccttcgccaat 408
|| |||||||| |||||
Sbjct: 3882 gggttttccttctccaat 3865
>gb|CW841227.1|CW841227 ET11006.Ds3.04.02.2003.jw89.611 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET11006, DNA sequence
Length = 608
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 368 atgagtgcatgattctgattttctggctttccttcgccaat 408
||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 161 atgagagcatgattctgattttcgggttttccttctccaat 121
Score = 40.1 bits (20), Expect = 0.45
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 271 attgaactcttctagtaggtttctcatctttagagcttcttcaaagta 318
|||||||||||| || || |||||||| || || |||||||| |||||
Sbjct: 357 attgaactcttccagcagatttctcattttaagtgcttcttccaagta 310
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
sequence
Length = 104009
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 368 atgagtgcatgattctgattttctggctttccttcgccaat 408
||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 11978 atgagagcatgattctgattttcgggttttccttctccaat 11938
>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
sequence
Length = 102585
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 368 atgagtgcatgattctgattttctggctttccttcgccaat 408
||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 94180 atgagagcatgattctgattttcgggttttccttctccaat 94140
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 368 atgagtgcatgattctgattttctggctttccttcgccaat 408
||||| ||||||||||||||||| || |||||||| |||||
Sbjct: 5710835 atgagagcatgattctgattttcgggttttccttctccaat 5710795
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 15842275 ctctttttcgttgccatagatctg 15842252
>gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT12585, DNA sequence
Length = 525
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 atcaaaaacatctgggtggccataatg 114
||||||||||||||| |||||||||||
Sbjct: 296 atcaaaaacatctggatggccataatg 322
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatg 114
||||||||||||||| |||||||||||
Sbjct: 4410 atcaaaaacatctggatggccataatg 4384
Score = 44.1 bits (22), Expect = 0.029
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttcgccaa 407
|||||||| || ||||||||||||||||| ||||
Sbjct: 4121 gcatgattttggttttctggctttccttctccaa 4088
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 182 gacatgaaccaagcaagagaagaaactga 210
||||||||||||||||| || ||||||||
Sbjct: 4316 gacatgaaccaagcaagggatgaaactga 4288
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 atcaaaaacatctgggtggccataatg 114
||||||||||||||| |||||||||||
Sbjct: 3925453 atcaaaaacatctggatggccataatg 3925479
Score = 44.1 bits (22), Expect = 0.029
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 374 gcatgattctgattttctggctttccttcgccaa 407
|||||||| || ||||||||||||||||| ||||
Sbjct: 3926023 gcatgattttggttttctggctttccttctccaa 3926056
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 atcaaaaacatctgggtggccataatg 114
||||||||||||||| |||||||||||
Sbjct: 64294 atcaaaaacatctggatggccataatg 64320
Score = 44.1 bits (22), Expect = 0.029
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 374 gcatgattctgattttctggctttccttcgccaa 407
|||||||| || ||||||||||||||||| ||||
Sbjct: 64864 gcatgattttggttttctggctttccttctccaa 64897
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatg 114
||||||||||||||| |||||||||||
Sbjct: 4552 atcaaaaacatctggatggccataatg 4526
Score = 44.1 bits (22), Expect = 0.029
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttcgccaa 407
|||||||| || ||||||||||||||||| ||||
Sbjct: 4263 gcatgattttggttttctggctttccttctccaa 4230
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 182 gacatgaaccaagcaagagaagaaactga 210
||||||||||||||||| || ||||||||
Sbjct: 4458 gacatgaaccaagcaagggatgaaactga 4430
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 88 atcaaaaacatctgggtggccataatg 114
||||||||||||||| |||||||||||
Sbjct: 4112480 atcaaaaacatctggatggccataatg 4112506
Score = 44.1 bits (22), Expect = 0.029
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 374 gcatgattctgattttctggctttccttcgccaa 407
|||||||| || ||||||||||||||||| ||||
Sbjct: 4113050 gcatgattttggttttctggctttccttctccaa 4113083
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 182 gacatgaaccaagcaagagaagaaac 207
||||||||||||||||| ||||||||
Sbjct: 1986516 gacatgaaccaagcaagtgaagaaac 1986491
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
complete sequence
Length = 93724
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 182 gacatgaaccaagcaagagaagaaac 207
||||||||||||||||| ||||||||
Sbjct: 67340 gacatgaaccaagcaagtgaagaaac 67365
>ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTHASE-LIKE 7);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT1G06490 (ATGSL07) mRNA, complete cds
Length = 5802
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 182 gacatgaaccaagcaagagaagaaac 207
||||||||||||||||| ||||||||
Sbjct: 4121 gacatgaaccaagcaagtgaagaaac 4096
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 308 tcttcaaagtagttgtcttggttcat 333
||||||||||||||||| ||||||||
Sbjct: 3992 tcttcaaagtagttgtcctggttcat 3967
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 182 gacatgaaccaagcaagagaagaaac 207
||||||||||||||||| ||||||||
Sbjct: 1986669 gacatgaaccaagcaagtgaagaaac 1986644
>gb|BE038607.1|BE038607 AB01G09 AB Arabidopsis thaliana cDNA 5' similar to alcohol
dehydrogenase, mRNA sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 167 ctctttttcgttgccatagatctg 144
>gb|AV831087.1|AV831087 AV831087 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-84-B14 5',
mRNA sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 4 gttgaaaccagcaaaaatgtcctcactaatgttgat 39
||||||||||||||| || || |||||||| |||||
Sbjct: 97 gttgaaaccagcaaatatatcttcactaatattgat 62
>gb|AU237027.1|AU237027 AU237027 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-43-F21 5',
mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 139 ctctttttcgttgccatagatctg 116
>gb|CB260213.1|CB260213 87-E011178-013-009-N21-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770N219Q 5-PRIME, mRNA sequence
Length = 563
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 175 ctctttttcgttgccatagatctg 152
>gb|BX837456.1|BX837456 BX837456 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS33ZB08 5PRIM, mRNA
sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 169 ctctttttcgttgccatagatctg 146
>gb|AY099734.1| Arabidopsis thaliana putative glucan synthase (At3g07160) mRNA,
complete cds
Length = 1780
Score = 40.1 bits (20), Expect = 0.45
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 4 gttgaaaccagcaaaaatgtcctcactaatgttgat 39
||||||||||||||| || || |||||||| |||||
Sbjct: 97 gttgaaaccagcaaatatatcttcactaatattgat 62
>gb|BT004098.1| Arabidopsis thaliana clone RAFL15-43-F21 (R20964) putative
aldo/keto reductase (At2g37770) mRNA, partial cds
Length = 1152
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 138 ctctttttcgttgccatagatctg 115
>emb|AX651726.1| Sequence 560 from Patent WO03000898
Length = 873
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 171 ctctttttcgttgccatagatctg 148
>gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete
sequence
Length = 93845
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 91264 ctctttttcgttgccatagatctg 91241
>emb|BX820913.1|CNS0A7YS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH81ZB03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1368
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 176 ctctttttcgttgccatagatctg 153
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 40.1 bits (20), Expect = 0.45
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 3 agttgaaaccagcaaaaatgtcctcact 30
|||||||||||||||| ||||| |||||
Sbjct: 762 agttgaaaccagcaaatatgtcttcact 735
>emb|CQ805766.1| Sequence 2177 from Patent WO2004035798
Length = 948
Score = 40.1 bits (20), Expect = 0.45
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 493 ctctttttcgttgccattgatctg 516
||||||||||||||||| ||||||
Sbjct: 171 ctctttttcgttgccatagatctg 148
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 40.1 bits (20), Expect = 0.45
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 3 agttgaaaccagcaaaaatgtcctcact 30
|||||||||||||||| ||||| |||||
Sbjct: 4372 agttgaaaccagcaaatatgtcttcact 4345
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 368,468
Number of Sequences: 1013581
Number of extensions: 368468
Number of successful extensions: 30579
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29003
Number of HSP's gapped (non-prelim): 1575
length of query: 632
length of database: 908,940,872
effective HSP length: 20
effective length of query: 612
effective length of database: 888,669,252
effective search space: 543865582224
effective search space used: 543865582224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)