BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AX651854.1| Sequence 720 from Patent WO03000898 109 7e-022
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 109 7e-022
ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTH... 100 7e-019
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 88 3e-015
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 88 3e-015
gb|AU237455.1|AU237455 AU237455 RAFL16 Arabidopsis thaliana... 76 1e-011
emb|AX412747.1| Sequence 511 from Patent WO0222675 76 1e-011
emb|AX508002.1| Sequence 2697 from Patent WO0216655 76 1e-011
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 68 2e-009
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 68 2e-009
ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTH... 66 9e-009
gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arab... 58 2e-006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 58 2e-006
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 58 2e-006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 58 2e-006
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 54 4e-005
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 54 4e-005
gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis tha... 54 4e-005
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 54 4e-005
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 54 4e-005
tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase ... 52 1e-004
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 52 1e-004
ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTH... 52 1e-004
ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTH... 52 1e-004
ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synth... 52 1e-004
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 50 6e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 50 6e-004
emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome... 50 6e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 50 6e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 50 6e-004
gb|CL509491.1|CL509491 SAIL_812_E05.v2 SAIL Collection Arab... 46 0.009
emb|BX532667.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.009
emb|CR395420.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.035
emb|CR395421.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.035
gb|CW841227.1|CW841227 ET11006.Ds3.04.02.2003.jw89.611 Arab... 44 0.035
gb|AU238195.1|AU238195 AU238195 RAFL16 Arabidopsis thaliana... 44 0.035
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 44 0.035
gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J... 44 0.035
gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F... 44 0.035
dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.035
dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.035
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.14
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 42 0.14
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 42 0.14
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 42 0.14
ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTH... 42 0.14
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 42 0.14
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 109 bits (55), Expect = 7e-022
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
|||||||| |||||||| | ||| |||||||||||||||||||| || |||||||| |||
Sbjct: 4520 gtaacatttccttcacgaagtgtagaattgaatcctgcaaatatatcttcactgaggttg 4461
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
|| | ||||||||||| || |||||||| || || | || || || | ||| || | |
Sbjct: 4460 attaccttggatgctttgctaacaccacctcttgttagatgaaacagtctatcaaaaaca 4401
Query: 150 tcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaatt 209
|| ||||| |||||||| ||||| |||||||| ||||| || | | || || |||||
Sbjct: 4400 tctggatggccataatggaaacgcaccctcaatggatttgccaataatctctgaccaatg 4341
Query: 210 gttacgaaactagtttcctgatttgacatgaaccatgcaagggatga 256
|| || |||||||| || ||||||||||||||||| |||||||||||
Sbjct: 4340 gtaacaaaactagtctcttgatttgacatgaaccaagcaagggatga 4294
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 109 bits (55), Expect = 7e-022
Identities = 184/227 (81%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
|||||||| |||||||| | ||| |||||||||||||||||||| || |||||||| |||
Sbjct: 4662 gtaacatttccttcacgaagtgtagaattgaatcctgcaaatatatcttcactgaggttg 4603
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
|| | ||||||||||| || |||||||| || || | || || || | ||| || | |
Sbjct: 4602 attaccttggatgctttgctaacaccacctcttgttagatgaaacagtctatcaaaaaca 4543
Query: 150 tcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaatt 209
|| ||||| |||||||| ||||| |||||||| ||||| || | | || || |||||
Sbjct: 4542 tctggatggccataatggaaacgcaccctcaatggatttgccaataatctctgaccaatg 4483
Query: 210 gttacgaaactagtttcctgatttgacatgaaccatgcaagggatga 256
|| || |||||||| || ||||||||||||||||| |||||||||||
Sbjct: 4482 gtaacaaaactagtctcttgatttgacatgaaccaagcaagggatga 4436
>ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTHASE-LIKE 7);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT1G06490 (ATGSL07) mRNA, complete cds
Length = 5802
Score = 99.6 bits (50), Expect = 7e-019
Identities = 113/134 (84%)
Strand = Plus / Minus
Query: 147 atatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtcca 206
||||||||||| |||||||| ||||| ||||||| ||||| || || || ||||| |||
Sbjct: 4208 atatcaggatggccataatggaaacgcaccctcagaggatttgccagaacacgttggcca 4149
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgccc 266
|| ||||| ||||| ||||| ||||| ||||||||||| ||||| || || ||||| ||
Sbjct: 4148 atggttacaaaacttgtttcttgattcgacatgaaccaagcaagtgaagaaacacttcca 4089
Query: 267 gtaaatatgtgttc 280
||||||||||||||
Sbjct: 4088 gtaaatatgtgttc 4075
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 87.7 bits (44), Expect = 3e-015
Identities = 188/236 (79%)
Strand = Plus / Minus
Query: 27 tgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgaga 86
||||| ||||| |||||||||| || ||||| || |||||||||||||| ||||| |||
Sbjct: 4382 tgagtcacatttccttcacgcagagtagaattaaaacctgcaaatatgtcttcactaaga 4323
Query: 87 ttgataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaag 146
||||| | ||| || ||||| | | |||||| || |||| ||| || || ||||| ||
Sbjct: 4322 ttgatgactttagaagctttgcagataccacctctggtaaggtgaaacagacgatcaaaa 4263
Query: 147 atatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtcca 206
||||| ||||| || ||||| || || || |||| ||| | || ||||||| ||| |||
Sbjct: 4262 atatctggatgtccgtaatggaatcgtactttcaagggactagctagcactctttgccca 4203
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacact 262
|| ||||| ||||| | || ||||||||||| ||||||||||| || ||||||||
Sbjct: 4202 atcgttacaaaactgttctcttgatttgacataaaccatgcaagagaagacacact 4147
Score = 75.8 bits (38), Expect = 1e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcat 385
|||||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||
Sbjct: 4080 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagttgtcctgattcat 4021
Query: 386 atctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctgg 445
||||| || || | | ||| || | ||| ||||| || ||||||||||||||||| ||
Sbjct: 4020 gtctatcgtctgcaacccttctccacgggtaaatatgatagcatggttctgattttccgg 3961
Query: 446 ctttcc 451
||||||
Sbjct: 3960 ctttcc 3955
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 87.7 bits (44), Expect = 3e-015
Identities = 188/236 (79%)
Strand = Plus / Minus
Query: 27 tgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgaga 86
||||| ||||| |||||||||| || ||||| || |||||||||||||| ||||| |||
Sbjct: 4382 tgagtcacatttccttcacgcagagtagaattaaaacctgcaaatatgtcttcactaaga 4323
Query: 87 ttgataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaag 146
||||| | ||| || ||||| | | |||||| || |||| ||| || || ||||| ||
Sbjct: 4322 ttgatgactttagaagctttgcagataccacctctggtaaggtgaaacagacgatcaaaa 4263
Query: 147 atatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtcca 206
||||| ||||| || ||||| || || || |||| ||| | || ||||||| ||| |||
Sbjct: 4262 atatctggatgtccgtaatggaatcgtactttcaagggactagctagcactctttgccca 4203
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacact 262
|| ||||| ||||| | || ||||||||||| ||||||||||| || ||||||||
Sbjct: 4202 atcgttacaaaactgttctcttgatttgacataaaccatgcaagagaagacacact 4147
Score = 75.8 bits (38), Expect = 1e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcat 385
|||||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||
Sbjct: 4080 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagttgtcctgattcat 4021
Query: 386 atctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctgg 445
||||| || || | | ||| || | ||| ||||| || ||||||||||||||||| ||
Sbjct: 4020 gtctatcgtctgcaacccttctccacgggtaaatatgatagcatggttctgattttccgg 3961
Query: 446 ctttcc 451
||||||
Sbjct: 3960 ctttcc 3955
>gb|AU237455.1|AU237455 AU237455 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-N18 5',
mRNA sequence
Length = 661
Score = 75.8 bits (38), Expect = 1e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcat 385
|||||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||
Sbjct: 469 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagttgtcctgattcat 410
Query: 386 atctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctgg 445
||||| || || | | ||| || | ||| ||||| || ||||||||||||||||| ||
Sbjct: 409 gtctatcgtctgcaacccttctccacgggtaaatatgatagcatggttctgattttccgg 350
Query: 446 ctttcc 451
||||||
Sbjct: 349 ctttcc 344
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 75.8 bits (38), Expect = 1e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcat 385
|||||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||
Sbjct: 3933 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagttgtcctgattcat 3874
Query: 386 atctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctgg 445
||||| || || | | ||| || | ||| ||||| || ||||||||||||||||| ||
Sbjct: 3873 gtctatcgtctgcaacccttctccacgggtaaatatgatagcatggttctgattttccgg 3814
Query: 446 ctttcc 451
||||||
Sbjct: 3813 ctttcc 3808
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 75.8 bits (38), Expect = 1e-011
Identities = 104/126 (82%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcat 385
|||||||||||||| || |||||||| ||||| |||||||| |||| |||||||||||
Sbjct: 3933 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagttgtcctgattcat 3874
Query: 386 atctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctgg 445
||||| || || | | ||| || | ||| ||||| || ||||||||||||||||| ||
Sbjct: 3873 gtctatcgtctgcaacccttctccacgggtaaatatgatagcatggttctgattttccgg 3814
Query: 446 ctttcc 451
||||||
Sbjct: 3813 ctttcc 3808
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 67.9 bits (34), Expect = 2e-009
Identities = 190/242 (78%)
Strand = Plus / Minus
Query: 27 tgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgaga 86
||||| |||||||||||||| | || || ||||| || ||||||||||| ||||| |||
Sbjct: 790 tgagtcacattgccttcacgaagagtagagttgaaaccagcaaatatgtcttcacttaga 731
Query: 87 ttgataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaag 146
||||||| ||| || ||||| | |||||||| || |||| ||| || || ||||| ||
Sbjct: 730 ttgataactttagaagctttgcagacaccacctctggtaaggtgaaacagtcgatcaaaa 671
Query: 147 atatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtcca 206
| ||| |||||||| ||||| || || ||| |||| || | || ||||| | || |||
Sbjct: 670 acatctggatgaccgtaatggaatcgtaccttcaaggggctagctagcaccctctgccca 611
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgccc 266
|| || || || || |||||||||| ||||| ||||||||||| || || ||||| |||
Sbjct: 610 atagtaacaaagctgttttcctgattcgacataaaccatgcaagagaagaaacacttccc 551
Query: 267 gt 268
||
Sbjct: 550 gt 549
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 67.9 bits (34), Expect = 2e-009
Identities = 190/242 (78%)
Strand = Plus / Minus
Query: 27 tgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgaga 86
||||| |||||||||||||| | || || ||||| || ||||||||||| ||||| |||
Sbjct: 4400 tgagtcacattgccttcacgaagagtagagttgaaaccagcaaatatgtcttcacttaga 4341
Query: 87 ttgataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaag 146
||||||| ||| || ||||| | |||||||| || |||| ||| || || ||||| ||
Sbjct: 4340 ttgataactttagaagctttgcagacaccacctctggtaaggtgaaacagtcgatcaaaa 4281
Query: 147 atatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtcca 206
| ||| |||||||| ||||| || || ||| |||| || | || ||||| | || |||
Sbjct: 4280 acatctggatgaccgtaatggaatcgtaccttcaaggggctagctagcaccctctgccca 4221
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgccc 266
|| || || || || |||||||||| ||||| ||||||||||| || || ||||| |||
Sbjct: 4220 atagtaacaaagctgttttcctgattcgacataaaccatgcaagagaagaaacacttccc 4161
Query: 267 gt 268
||
Sbjct: 4160 gt 4159
>ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTHASE-LIKE 11);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G59100 (ATGSL11) mRNA, complete cds
Length = 5805
Score = 65.9 bits (33), Expect = 9e-009
Identities = 108/133 (81%)
Strand = Plus / Minus
Query: 150 tcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaatt 209
||||||||||||||||||||||| ||||||| || || || | | || ||| ||||||
Sbjct: 4208 tcaggatgaccataatgaaaacggaccctcagagggtttgccaaaattctttggccaatt 4149
Query: 210 gttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgta 269
|| || |||||| | |||||||| ||||||||||| || | || || ||||| || |||
Sbjct: 4148 gtcacaaaactactctcctgattggacatgaaccaagctaatgacgaaacacttccagta 4089
Query: 270 aatatgtgttctc 282
||||| |||||||
Sbjct: 4088 aatatatgttctc 4076
Score = 48.1 bits (24), Expect = 0.002
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
|||||||||||||||||||| || ||| || | || ||||| || ||||| || |||
Sbjct: 3977 tgattcatatctatagtttgtagtgcttcaccacgtgtaaatatgatagcatgattttga 3918
Query: 438 ttttctggctttccttcacc 457
||||| ||||||||||||||
Sbjct: 3917 ttttcaggctttccttcacc 3898
>gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT12585, DNA sequence
Length = 525
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 216 aaactagtttcctgatttgacatgaaccatgcaagggatga 256
|||||||| || ||||||||||||||||| |||||||||||
Sbjct: 467 aaactagtctcttgatttgacatgaaccaagcaagggatga 507
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacc 118
||||||||||| || |||||||| ||||| | ||||||||||| || ||||||||
Sbjct: 219 cctgcaaatatatcttcactgaggttgattaccttggatgctttgctaacaccacc 274
Score = 44.1 bits (22), Expect = 0.035
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgc 67
|||||||| |||||||| | ||| ||||||||||||||
Sbjct: 93 gtaacatttccttcacgaagtgtagaattgaatcctgc 130
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 216 aaactagtttcctgatttgacatgaaccatgcaagggatga 256
|||||||| || ||||||||||||||||| |||||||||||
Sbjct: 3925624 aaactagtctcttgatttgacatgaaccaagcaagggatga 3925664
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacc 118
||||||||||| || |||||||| ||||| | ||||||||||| || ||||||||
Sbjct: 3925376 cctgcaaatatatcttcactgaggttgattaccttggatgctttgctaacaccacc 3925431
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 225 tcctgatttgacatgaaccatgcaag 250
|||||||||||||| |||||||||||
Sbjct: 13464971 tcctgatttgacataaaccatgcaag 13464946
Score = 44.1 bits (22), Expect = 0.035
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgc 67
|||||||| |||||||| | ||| ||||||||||||||
Sbjct: 3925250 gtaacatttccttcacgaagtgtagaattgaatcctgc 3925287
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 216 aaactagtttcctgatttgacatgaaccatgcaagggatga 256
|||||||| || ||||||||||||||||| |||||||||||
Sbjct: 64465 aaactagtctcttgatttgacatgaaccaagcaagggatga 64505
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacc 118
||||||||||| || |||||||| ||||| | ||||||||||| || ||||||||
Sbjct: 64217 cctgcaaatatatcttcactgaggttgattaccttggatgctttgctaacaccacc 64272
Score = 44.1 bits (22), Expect = 0.035
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgc 67
|||||||| |||||||| | ||| ||||||||||||||
Sbjct: 64091 gtaacatttccttcacgaagtgtagaattgaatcctgc 64128
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 216 aaactagtttcctgatttgacatgaaccatgcaagggatga 256
|||||||| || ||||||||||||||||| |||||||||||
Sbjct: 4112651 aaactagtctcttgatttgacatgaaccaagcaagggatga 4112691
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacc 118
||||||||||| || |||||||| ||||| | ||||||||||| || ||||||||
Sbjct: 4112403 cctgcaaatatatcttcactgaggttgattaccttggatgctttgctaacaccacc 4112458
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 225 tcctgatttgacatgaaccatgcaag 250
|||||||||||||| |||||||||||
Sbjct: 14548826 tcctgatttgacataaaccatgcaag 14548801
Score = 44.1 bits (22), Expect = 0.035
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgc 67
|||||||| |||||||| | ||| ||||||||||||||
Sbjct: 4112277 gtaacatttccttcacgaagtgtagaattgaatcctgc 4112314
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 198 cgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgac 257
||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 1986552 cgttggccaatggttacaaaacttgtttcttgattcgacatgaaccaagcaagtgaagaa 1986493
Query: 258 acactgc 264
|||||||
Sbjct: 1986492 acactgc 1986486
Score = 54.0 bits (27), Expect = 4e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 192 agcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagg 251
||||||| ||| ||||| ||||| ||||| | || ||||||||||| |||||||||||
Sbjct: 1649935 agcactctttgcccaatcgttacaaaactgttctcttgatttgacataaaccatgcaaga 1649994
Query: 252 gatgacacact 262
|| ||||||||
Sbjct: 1649995 gaagacacact 1650005
Score = 46.1 bits (23), Expect = 0.009
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 417 aatattattgcatggttctgattttctggctttcc 451
||||| || ||||||||||||||||| ||||||||
Sbjct: 1650373 aatatgatagcatggttctgattttccggctttcc 1650407
Score = 46.1 bits (23), Expect = 0.009
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
|||||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct: 1650160 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagt 1650206
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgat 91
|||||||||||||| ||||| ||||||||
Sbjct: 1649725 cctgcaaatatgtcttcactaagattgat 1649753
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 54.0 bits (27), Expect = 4e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 192 agcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagg 251
||||||| ||| ||||| ||||| ||||| | || ||||||||||| |||||||||||
Sbjct: 31583 agcactctttgcccaatcgttacaaaactgttctcttgatttgacataaaccatgcaaga 31642
Query: 252 gatgacacact 262
|| ||||||||
Sbjct: 31643 gaagacacact 31653
Score = 46.1 bits (23), Expect = 0.009
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 417 aatattattgcatggttctgattttctggctttcc 451
||||| || ||||||||||||||||| ||||||||
Sbjct: 32021 aatatgatagcatggttctgattttccggctttcc 32055
Score = 46.1 bits (23), Expect = 0.009
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
|||||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct: 31808 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagt 31854
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgat 91
|||||||||||||| ||||| ||||||||
Sbjct: 31373 cctgcaaatatgtcttcactaagattgat 31401
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
complete sequence
Length = 93724
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 198 cgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgac 257
||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 67304 cgttggccaatggttacaaaacttgtttcttgattcgacatgaaccaagcaagtgaagaa 67363
Query: 258 acactgc 264
|||||||
Sbjct: 67364 acactgc 67370
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 54.0 bits (27), Expect = 4e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 192 agcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagg 251
||||||| ||| ||||| ||||| ||||| | || ||||||||||| |||||||||||
Sbjct: 82132 agcactctttgcccaatcgttacaaaactgttctcttgatttgacataaaccatgcaaga 82191
Query: 252 gatgacacact 262
|| ||||||||
Sbjct: 82192 gaagacacact 82202
Score = 46.1 bits (23), Expect = 0.009
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 417 aatattattgcatggttctgattttctggctttcc 451
||||| || ||||||||||||||||| ||||||||
Sbjct: 82570 aatatgatagcatggttctgattttccggctttcc 82604
Score = 46.1 bits (23), Expect = 0.009
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
|||||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct: 82357 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagt 82403
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgat 91
|||||||||||||| ||||| ||||||||
Sbjct: 81922 cctgcaaatatgtcttcactaagattgat 81950
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 198 cgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgac 257
||||| ||||| ||||| ||||| ||||| ||||| ||||||||||| ||||| || ||
Sbjct: 1986705 cgttggccaatggttacaaaacttgtttcttgattcgacatgaaccaagcaagtgaagaa 1986646
Query: 258 acactgc 264
|||||||
Sbjct: 1986645 acactgc 1986639
Score = 54.0 bits (27), Expect = 4e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 192 agcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagg 251
||||||| ||| ||||| ||||| ||||| | || ||||||||||| |||||||||||
Sbjct: 1650058 agcactctttgcccaatcgttacaaaactgttctcttgatttgacataaaccatgcaaga 1650117
Query: 252 gatgacacact 262
|| ||||||||
Sbjct: 1650118 gaagacacact 1650128
Score = 46.1 bits (23), Expect = 0.009
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 417 aatattattgcatggttctgattttctggctttcc 451
||||| || ||||||||||||||||| ||||||||
Sbjct: 1650496 aatatgatagcatggttctgattttccggctttcc 1650530
Score = 46.1 bits (23), Expect = 0.009
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
|||||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct: 1650283 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagt 1650329
Score = 42.1 bits (21), Expect = 0.14
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgat 91
|||||||||||||| ||||| ||||||||
Sbjct: 1649848 cctgcaaatatgtcttcactaagattgat 1649876
>tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase (LAP1) mRNA, complete cds
Length = 5772
Score = 52.0 bits (26), Expect = 1e-004
Identities = 116/146 (79%)
Strand = Plus / Minus
Query: 140 atcgaagatatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcg 199
|||||||| |||||| || ||||| ||||| | ||| |||| ||| | || || |||||
Sbjct: 4185 atcgaagacatcagggtgtccatagtgaaaccttaccttcaaaggacttgccaggactcg 4126
Query: 200 ttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacac 259
|| ||||| || || ||||| ||||||||||||||||| ||||| || | || || ||
Sbjct: 4125 ctgaccaatggtcacaaaacttgtttcctgatttgacataaaccaggctaaagaagaaac 4066
Query: 260 actgcccgtaaatatgtgttctctga 285
|||||| ||||| || || |||||||
Sbjct: 4065 actgccagtaaaaatatgctctctga 4040
>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds
Length = 5950
Score = 52.0 bits (26), Expect = 1e-004
Identities = 116/146 (79%)
Strand = Plus / Minus
Query: 140 atcgaagatatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcg 199
|||||||| |||||| || ||||| ||||| | ||| |||| ||| | || || |||||
Sbjct: 4338 atcgaagacatcagggtgtccatagtgaaaccttaccttcaaaggacttgccaggactcg 4279
Query: 200 ttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacac 259
|| ||||| || || ||||| ||||||||||||||||| ||||| || | || || ||
Sbjct: 4278 ctgaccaatggtcacaaaacttgtttcctgatttgacataaaccaggctaaagaagaaac 4219
Query: 260 actgcccgtaaatatgtgttctctga 285
|||||| ||||| || || |||||||
Sbjct: 4218 actgccagtaaaaatatgctctctga 4193
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 327 aactcttgcagcagatttctcatttt 352
||||||| ||||||||||||||||||
Sbjct: 4151 aactcttccagcagatttctcatttt 4126
>ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTHASE-LIKE 4);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G14570 (ATGSL04) mRNA, complete cds
Length = 5922
Score = 52.0 bits (26), Expect = 1e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgccc 266
||||| || ||||| ||||| |||| ||||||||||||||| || || || ||||| ||
Sbjct: 4283 attgtgacaaaactggtttcttgatatgacatgaaccatgctagagaagaaacacttccg 4224
Query: 267 gtaaatatgtgttc 280
|| |||||||||||
Sbjct: 4223 gtgaatatgtgttc 4210
Score = 42.1 bits (21), Expect = 0.14
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 330 tcttgcagcagatttctcattttcaaagcctcctcca 366
||||| || |||||||||||||| |||||||| ||||
Sbjct: 4160 tcttgaaggagatttctcattttgaaagcctcttcca 4124
>ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTHASE-LIKE 9);
1,3-beta-glucan synthase AT5G36870 (ATGSL09) mRNA,
complete cds
Length = 5589
Score = 52.0 bits (26), Expect = 1e-004
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 37 tgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattgataattt 96
|||||||||| | || |||||||| |||||||||||||| ||||| ||||| |||| ||
Sbjct: 4126 tgccttcacgtagagtagaattgaaacctgcaaatatgtcttcacttagattaataactt 4067
Query: 97 tggatgcttt 106
| || |||||
Sbjct: 4066 tagaagcttt 4057
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 225 tcctgatttgacatgaaccatgcaag 250
|||||||||||||| |||||||||||
Sbjct: 3938 tcctgatttgacataaaccatgcaag 3913
>ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase AT2G13680 mRNA,
complete cds
Length = 5772
Score = 52.0 bits (26), Expect = 1e-004
Identities = 116/146 (79%)
Strand = Plus / Minus
Query: 140 atcgaagatatcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcg 199
|||||||| |||||| || ||||| ||||| | ||| |||| ||| | || || |||||
Sbjct: 4185 atcgaagacatcagggtgtccatagtgaaaccttaccttcaaaggacttgccaggactcg 4126
Query: 200 ttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacac 259
|| ||||| || || ||||| ||||||||||||||||| ||||| || | || || ||
Sbjct: 4125 ctgaccaatggtcacaaaacttgtttcctgatttgacataaaccaggctaaagaagaaac 4066
Query: 260 actgcccgtaaatatgtgttctctga 285
|||||| ||||| || || |||||||
Sbjct: 4065 actgccagtaaaaatatgctctctga 4040
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 50.1 bits (25), Expect = 6e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||| ||||| |||||||||| ||| || ||||| | |||||||| || |||
Sbjct: 91375 gcaaatatgtcttcacttagattgataactttagaagctttgcagacaccacctctggta 91434
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatg 166
| ||| || || ||||| || | ||| |||||||| |||||
Sbjct: 91435 aggtgaaacagtcgatcaaaaacatctggatgaccgtaatg 91475
Score = 46.1 bits (23), Expect = 0.009
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 223 tttcctgatttgacatgaaccatgcaagggatgacacactgcc 265
|||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 91610 tttcctgattcgacataaaccatgcaagagaagaaacactgcc 91652
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 150 tcaggatgaccataatgaaaacgaaccct 178
||||||||||||||||||||||| |||||
Sbjct: 21810346 tcaggatgaccataatgaaaacggaccct 21810318
Score = 48.1 bits (24), Expect = 0.002
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
|||||||||||||||||||| || ||| || | || ||||| || ||||| || |||
Sbjct: 21809738 tgattcatatctatagtttgtagtgcttcaccacgtgtaaatatgatagcatgattttga 21809679
Query: 438 ttttctggctttccttcacc 457
||||| ||||||||||||||
Sbjct: 21809678 ttttcaggctttccttcacc 21809659
Score = 44.1 bits (22), Expect = 0.035
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgc 264
||||| || ||||| ||||| |||| ||||||||||||||| || || || |||||||
Sbjct: 4890464 attgtgacaaaactggtttcttgatatgacatgaaccatgctagagaagaaacactgc 4890407
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaacca 244
|||||||| || |||||| | |||||||| |||||||||||
Sbjct: 21810102 ccaattgtcacaaaactactctcctgattggacatgaacca 21810062
Score = 42.1 bits (21), Expect = 0.14
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 330 tcttgcagcagatttctcattttcaaagcctcctcca 366
||||| || |||||||||||||| |||||||| ||||
Sbjct: 4890234 tcttgaaggagatttctcattttgaaagcctcttcca 4890198
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
Length = 89517
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 150 tcaggatgaccataatgaaaacgaaccct 178
||||||||||||||||||||||| |||||
Sbjct: 65032 tcaggatgaccataatgaaaacggaccct 65004
Score = 48.1 bits (24), Expect = 0.002
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
|||||||||||||||||||| || ||| || | || ||||| || ||||| || |||
Sbjct: 64424 tgattcatatctatagtttgtagtgcttcaccacgtgtaaatatgatagcatgattttga 64365
Query: 438 ttttctggctttccttcacc 457
||||| ||||||||||||||
Sbjct: 64364 ttttcaggctttccttcacc 64345
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaacca 244
|||||||| || |||||| | |||||||| |||||||||||
Sbjct: 64788 ccaattgtcacaaaactactctcctgattggacatgaacca 64748
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 50.1 bits (25), Expect = 6e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||| ||||| |||||||||| ||| || ||||| | |||||||| || |||
Sbjct: 13605112 gcaaatatgtcttcacttagattgataactttagaagctttgcagacaccacctctggta 13605053
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatg 166
| ||| || || ||||| || | ||| |||||||| |||||
Sbjct: 13605052 aggtgaaacagtcgatcaaaaacatctggatgaccgtaatg 13605012
Score = 46.1 bits (23), Expect = 0.009
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 223 tttcctgatttgacatgaaccatgcaagggatgacacactgcc 265
|||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 13604877 tttcctgattcgacataaaccatgcaagagaagaaacactgcc 13604835
Score = 44.1 bits (22), Expect = 0.035
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaacca 244
||||| || ||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 5711259 actcgctgaccaatggtcacaaaacttgtttcctgatttgacataaacca 5711210
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 50.1 bits (25), Expect = 6e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 150 tcaggatgaccataatgaaaacgaaccct 178
||||||||||||||||||||||| |||||
Sbjct: 21862778 tcaggatgaccataatgaaaacggaccct 21862750
Score = 48.1 bits (24), Expect = 0.002
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 378 tgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttctga 437
|||||||||||||||||||| || ||| || | || ||||| || ||||| || |||
Sbjct: 21862170 tgattcatatctatagtttgtagtgcttcaccacgtgtaaatatgatagcatgattttga 21862111
Query: 438 ttttctggctttccttcacc 457
||||| ||||||||||||||
Sbjct: 21862110 ttttcaggctttccttcacc 21862091
Score = 44.1 bits (22), Expect = 0.035
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgc 264
||||| || ||||| ||||| |||| ||||||||||||||| || || || |||||||
Sbjct: 4900568 attgtgacaaaactggtttcttgatatgacatgaaccatgctagagaagaaacactgc 4900511
Score = 42.1 bits (21), Expect = 0.14
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 204 ccaattgttacgaaactagtttcctgatttgacatgaacca 244
|||||||| || |||||| | |||||||| |||||||||||
Sbjct: 21862534 ccaattgtcacaaaactactctcctgattggacatgaacca 21862494
Score = 42.1 bits (21), Expect = 0.14
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 330 tcttgcagcagatttctcattttcaaagcctcctcca 366
||||| || |||||||||||||| |||||||| ||||
Sbjct: 4900338 tcttgaaggagatttctcattttgaaagcctcttcca 4900302
>gb|CL509491.1|CL509491 SAIL_812_E05.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_812_E05.v2, DNA sequence
Length = 886
Score = 46.1 bits (23), Expect = 0.009
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 223 tttcctgatttgacatgaaccatgcaagggatgacacactgcc 265
|||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 576 tttcctgattcgacataaaccatgcaagagaagaaacactgcc 618
>emb|BX532667.1| Arabidopsis thaliana T-DNA flanking sequence GK-493E07-019652,
genomic survey sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.009
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 326 aaactcttgcagcagatttctcattttcaaagcctcctccatatagt 372
|||||||||||||| || |||||||| ||||| |||||||| ||||
Sbjct: 185 aaactcttgcagcaagttcctcattttgaaagcttcctccatgtagt 139
>emb|CR395420.1| Arabidopsis thaliana T-DNA flanking sequence GK-020A09-026163,
genomic survey sequence
Length = 340
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 225 tcctgatttgacatgaaccatgcaag 250
|||||||||||||| |||||||||||
Sbjct: 190 tcctgatttgacataaaccatgcaag 165
>emb|CR395421.1| Arabidopsis thaliana T-DNA flanking sequence GK-020A09-026164,
genomic survey sequence
Length = 338
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 225 tcctgatttgacatgaaccatgcaag 250
|||||||||||||| |||||||||||
Sbjct: 188 tcctgatttgacataaaccatgcaag 163
>gb|CW841227.1|CW841227 ET11006.Ds3.04.02.2003.jw89.611 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET11006, DNA sequence
Length = 608
Score = 44.1 bits (22), Expect = 0.035
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaacca 244
||||| || ||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 585 actcgctgaccaatggtcacaaaacttgtttcctgatttgacataaacca 536
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 327 aactcttgcagcagatttctcatttt 352
||||||| ||||||||||||||||||
Sbjct: 353 aactcttccagcagatttctcatttt 328
>gb|AU238195.1|AU238195 AU238195 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-92-B13 5',
mRNA sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.035
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 223 tttcctgatttgacatgaaccatgcaagggatgacacactgcccgt 268
|||||||||| ||||| ||||||||||| || || ||||| |||||
Sbjct: 597 tttcctgattcgacataaaccatgcaagagaagaaacacttcccgt 552
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 44.1 bits (22), Expect = 0.035
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactc 22
||||||||||||||||||||||
Sbjct: 401 gcggccgcccgggcaggtactc 380
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
sequence
Length = 104009
Score = 44.1 bits (22), Expect = 0.035
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaacca 244
||||| || ||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 12402 actcgctgaccaatggtcacaaaacttgtttcctgatttgacataaacca 12353
>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
sequence
Length = 102585
Score = 44.1 bits (22), Expect = 0.035
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 195 actcgttgtccaattgttacgaaactagtttcctgatttgacatgaacca 244
||||| || ||||| || || ||||| ||||||||||||||||| |||||
Sbjct: 94604 actcgctgaccaatggtcacaaaacttgtttcctgatttgacataaacca 94555
>dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE1
Length = 84462
Score = 44.1 bits (22), Expect = 0.035
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 207 attgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgc 264
||||| || ||||| ||||| |||| ||||||||||||||| || || || |||||||
Sbjct: 28521 attgtgacaaaactggtttcttgatatgacatgaaccatgctagagaagaaacactgc 28464
Score = 42.1 bits (21), Expect = 0.14
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 330 tcttgcagcagatttctcattttcaaagcctcctcca 366
||||| || |||||||||||||| |||||||| ||||
Sbjct: 28291 tcttgaaggagatttctcattttgaaagcctcttcca 28255
>dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F5H8
Length = 70098
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 225 tcctgatttgacatgaaccatgcaag 250
|||||||||||||| |||||||||||
Sbjct: 61412 tcctgatttgacataaaccatgcaag 61387
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtact 52
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 348 gcggccgcccgggcaggtact 328
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggtact 331
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 142 gcggccgcccgggcaggtact 122
>ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTHASE-LIKE 10);
1,3-beta-glucan synthase AT3G07160 (ATGSL10) mRNA,
complete cds
Length = 5981
Score = 42.1 bits (21), Expect = 0.14
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 375 tcctgattcatatctatagtttgga 399
|||||||||||||| ||||||||||
Sbjct: 3992 tcctgattcatatcaatagtttgga 3968
>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
Length = 5281
Score = 42.1 bits (21), Expect = 0.14
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 339 agatttctcattttcaaagcctcctccatatagtgctcctgattcatatctat 391
|||||||||||||| | || ||||||| ||| | |||||||||||||||||
Sbjct: 3341 agatttctcattttgattgcttcctccagataattgtcctgattcatatctat 3289
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 355,372
Number of Sequences: 1013581
Number of extensions: 355372
Number of successful extensions: 28363
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26371
Number of HSP's gapped (non-prelim): 1985
length of query: 755
length of database: 908,940,872
effective HSP length: 20
effective length of query: 735
effective length of database: 888,669,252
effective search space: 653171900220
effective search space used: 653171900220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)