BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF7a10.yg.2.1
(523 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I... 78 2e-012
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 78 2e-012
gb|AY070487.1| Arabidopsis thaliana At2g34850/F19I3.8 mRNA,... 74 3e-011
ref|NM_179907.1| Arabidopsis thaliana NAD binding / catalyt... 74 3e-011
emb|BX815256.1|CNS0AAN9 Arabidopsis thaliana Full-length cD... 66 6e-009
gb|AF325108.1|AF325108 Arabidopsis thaliana unknown protein... 64 3e-008
gb|AY064973.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, ... 64 3e-008
emb|AX506245.1| Sequence 940 from Patent WO0216655 64 3e-008
gb|AF083751.1| Arabidopsis thaliana clone sps542 unknown mRNA 64 3e-008
gb|BT002614.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, ... 64 3e-008
gb|AY195742.1| Arabidopsis thaliana UDP-D-xylose 4-epimeras... 64 3e-008
emb|AX651855.1| Sequence 721 from Patent WO03000898 64 3e-008
ref|NM_102799.4| Arabidopsis thaliana MUR4 (MURUS 4); catal... 64 3e-008
ref|NM_001036041.1| Arabidopsis thaliana MUR4 (MURUS 4); ca... 64 3e-008
gb|CC795106.1|CC795106 SALK_069746.55.40.x Arabidopsis thal... 48 0.002
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.002
gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
gb|BH849470.1|BH849470 SALK_069737.54.50.x Arabidopsis thal... 40 0.37
gb|CC055840.1|CC055840 SALK_097720.30.80.x Arabidopsis thal... 40 0.37
gb|AU238753.1|AU238753 AU238753 RAFL19 Arabidopsis thaliana... 40 0.37
gb|AV553148.1|AV553148 AV553148 Arabidopsis thaliana roots ... 40 0.37
gb|BP829522.1|BP829522 BP829522 RAFL19 Arabidopsis thaliana... 40 0.37
gb|BP840085.1|BP840085 BP840085 RAFL19 Arabidopsis thaliana... 40 0.37
gb|AY094481.1| Arabidopsis thaliana At1g63180/F16M19_8 mRNA... 40 0.37
gb|AY133709.1| Arabidopsis thaliana clone C103301 putative ... 40 0.37
emb|AX506164.1| Sequence 859 from Patent WO0216655 40 0.37
gb|AY085887.1| Arabidopsis thaliana clone 1932 mRNA, comple... 40 0.37
gb|AC010795.5|AC010795 Arabidopsis thaliana chromosome 1 BA... 40 0.37
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 40 0.37
dbj|AB017065.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.37
dbj|AK117913.1| Arabidopsis thaliana At1g63180 mRNA for put... 40 0.37
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.37
emb|AL080253.2|ATF9F13 Arabidopsis thaliana DNA chromosome ... 40 0.37
emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosom... 40 0.37
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 40 0.37
ref|NM_123815.1| Arabidopsis thaliana DUR (DEFECTIVE UGE IN... 40 0.37
ref|NM_118165.2| Arabidopsis thaliana NAD binding / UDP-glu... 40 0.37
ref|NM_104996.3| Arabidopsis thaliana NAD binding / UDP-glu... 40 0.37
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.37
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.37
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete
sequence
Length = 108484
Score = 77.8 bits (39), Expect = 2e-012
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 433 caggtcaacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnn 492
||||| ||||| |||||| ||||||| |||||||| ||||||||||| ||||| ||||
Sbjct: 34671 caggttaacaaaatattttctgaaaacgcatttgacgctgtgatgcattttgctgctgtt 34612
Query: 493 gcttatgtgggagagagcaca 513
|||||||| ||||| ||||||
Sbjct: 34611 gcttatgttggagaaagcaca 34591
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 77.8 bits (39), Expect = 2e-012
Identities = 70/81 (86%)
Strand = Plus / Minus
Query: 433 caggtcaacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnn 492
||||| ||||| |||||| ||||||| |||||||| ||||||||||| ||||| ||||
Sbjct: 14713073 caggttaacaaaatattttctgaaaacgcatttgacgctgtgatgcattttgctgctgtt 14713014
Query: 493 gcttatgtgggagagagcaca 513
|||||||| ||||| ||||||
Sbjct: 14713013 gcttatgttggagaaagcaca 14712993
>gb|AY070487.1| Arabidopsis thaliana At2g34850/F19I3.8 mRNA, complete cds
Length = 1125
Score = 73.8 bits (37), Expect = 3e-011
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttat 498
||||| |||||| ||||||| |||||||| ||||||||||| ||||| |||| ||||||
Sbjct: 121 aacaaaatattttctgaaaacgcatttgacgctgtgatgcattttgctgctgttgcttat 180
Query: 499 gtgggagagagcaca 513
|| ||||| ||||||
Sbjct: 181 gttggagaaagcaca 195
>ref|NM_179907.1| Arabidopsis thaliana NAD binding / catalytic AT2G34850 mRNA,
complete cds
Length = 1106
Score = 73.8 bits (37), Expect = 3e-011
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 439 aacaagatatttgctgaaaatgcatttgatgctgtgatgcactttgcagctgnngcttat 498
||||| |||||| ||||||| |||||||| ||||||||||| ||||| |||| ||||||
Sbjct: 102 aacaaaatattttctgaaaacgcatttgacgctgtgatgcattttgctgctgttgcttat 161
Query: 499 gtgggagagagcaca 513
|| ||||| ||||||
Sbjct: 162 gttggagaaagcaca 176
>emb|BX815256.1|CNS0AAN9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS47ZB07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1831
Score = 65.9 bits (33), Expect = 6e-009
Identities = 106/129 (82%), Gaps = 1/129 (0%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 477 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 536
Query: 174 attggttcacatgccgctttaaggctcttacaggatagc-tatcgagttaccattgtgga 232
|||||||||||||| ||| ||||||| || |||| | | |||||||| |||||||||||
Sbjct: 537 attggttcacatgcagctctaaggcttctaaaggaaatcatatcgagtaaccattgtgga 596
Query: 233 taatctatc 241
||||||||
Sbjct: 597 caatctatc 605
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 703 gtcaacaagatattcacagagaatgcctttgaagctgtgatgca 746
>gb|AF325108.1|AF325108 Arabidopsis thaliana unknown protein (T5I8.7) mRNA, complete cds
Length = 1260
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 184 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 243
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 244 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 303
Query: 234 aatctatc 241
||||||||
Sbjct: 304 aatctatc 311
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 409 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 452
>gb|AY064973.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, complete cds
Length = 1863
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 520 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 579
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 580 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 639
Query: 234 aatctatc 241
||||||||
Sbjct: 640 aatctatc 647
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 745 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 788
>emb|AX506245.1| Sequence 940 from Patent WO0216655
Length = 1239
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 163 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 222
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 223 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 282
Query: 234 aatctatc 241
||||||||
Sbjct: 283 aatctatc 290
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 388 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 431
>gb|AF083751.1| Arabidopsis thaliana clone sps542 unknown mRNA
Length = 1924
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 534 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 593
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 594 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtgaccattgtggac 653
Query: 234 aatctatc 241
||||||||
Sbjct: 654 aatctatc 661
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 759 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 802
>gb|BT002614.1| Arabidopsis thaliana At1g30620/T5I8_7 mRNA, complete cds
Length = 1260
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 184 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 243
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 244 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 303
Query: 234 aatctatc 241
||||||||
Sbjct: 304 aatctatc 311
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 409 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 452
>gb|AY195742.1| Arabidopsis thaliana UDP-D-xylose 4-epimerase (MUR4) mRNA, complete
cds
Length = 1579
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 222 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 281
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 282 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 341
Query: 234 aatctatc 241
||||||||
Sbjct: 342 aatctatc 349
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 447 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 490
>emb|AX651855.1| Sequence 721 from Patent WO03000898
Length = 1239
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 163 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 222
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 223 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 282
Query: 234 aatctatc 241
||||||||
Sbjct: 283 aatctatc 290
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 388 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 431
>ref|NM_102799.4| Arabidopsis thaliana MUR4 (MURUS 4); catalytic AT1G30620 (MUR4)
transcript variant AT1G30620.1 mRNA, complete cds
Length = 1884
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 534 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 593
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 594 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 653
Query: 234 aatctatc 241
||||||||
Sbjct: 654 aatctatc 661
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 759 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 802
>ref|NM_001036041.1| Arabidopsis thaliana MUR4 (MURUS 4); catalytic AT1G30620 (MUR4)
transcript variant AT1G30620.2 mRNA, complete cds
Length = 1900
Score = 63.9 bits (32), Expect = 3e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 114 gtgttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttat 173
||||||||||| ||||| || || ||||| || || || || || || || ||||| |||
Sbjct: 580 gtgttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtat 639
Query: 174 attggttcacatgccgctttaaggctcttacaggatagctatcgagttaccattgtggat 233
|||||||||||||| ||| ||||||| || |||| |||||||| |||||||||||
Sbjct: 640 attggttcacatgcagctctaaggcttctaaaggaatcatatcgagtaaccattgtggac 699
Query: 234 aatctatc 241
||||||||
Sbjct: 700 aatctatc 707
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 805 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 848
>gb|CC795106.1|CC795106 SALK_069746.55.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_069746.55.40.x,
DNA sequence
Length = 479
Score = 48.1 bits (24), Expect = 0.002
Identities = 69/84 (82%)
Strand = Plus / Minus
Query: 116 gttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatat 175
||||||||| ||||| || || ||||| || || || || || || || ||||| |||||
Sbjct: 172 gttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtatat 113
Query: 176 tggttcacatgccgctttaaggct 199
|||||||||||| ||| |||||||
Sbjct: 112 tggttcacatgcagctctaaggct 89
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.002
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 116 gttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatat 175
||||||||| ||||| || || ||||| || || || || || || || ||||| |||||
Sbjct: 10864820 gttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtatat 10864879
Query: 176 tggttcacatgccgctttaaggct 199
|||||||||||| ||| |||||||
Sbjct: 10864880 tggttcacatgcagctctaaggct 10864903
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 10865135 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 10865178
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence
Length = 96183
Score = 48.1 bits (24), Expect = 0.002
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 116 gttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatat 175
||||||||| ||||| || || ||||| || || || || || || || ||||| |||||
Sbjct: 31291 gttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtatat 31350
Query: 176 tggttcacatgccgctttaaggct 199
|||||||||||| ||| |||||||
Sbjct: 31351 tggttcacatgcagctctaaggct 31374
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 31606 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 31649
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 69/84 (82%)
Strand = Plus / Plus
Query: 116 gttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatat 175
||||||||| ||||| || || ||||| || || || || || || || ||||| |||||
Sbjct: 10856022 gttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtatat 10856081
Query: 176 tggttcacatgccgctttaaggct 199
|||||||||||| ||| |||||||
Sbjct: 10856082 tggttcacatgcagctctaaggct 10856105
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 23432587 atttgatgctgtgattcactttgc 23432564
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 10856337 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 10856380
>gb|BH849470.1|BH849470 SALK_069737.54.50.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_069737.54.50.x,
DNA sequence
Length = 395
Score = 40.1 bits (20), Expect = 0.37
Identities = 59/72 (81%)
Strand = Plus / Minus
Query: 116 gttttctcgccatgaacctggtgttacccacgtcttagtaacaggaggagctggttatat 175
||||||||| ||||| || || ||||| || || || || || || || ||||| |||||
Sbjct: 122 gttttctcgacatgagccaggggttacacatgttttggtcactggtggtgctgggtatat 63
Query: 176 tggttcacatgc 187
||||||||||||
Sbjct: 62 tggttcacatgc 51
>gb|CC055840.1|CC055840 SALK_097720.30.80.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_097720.30.80.x,
DNA sequence
Length = 447
Score = 40.1 bits (20), Expect = 0.37
Identities = 40/46 (86%), Gaps = 1/46 (2%)
Strand = Plus / Plus
Query: 469 gctgtgatgcact-ttgcagctgnngcttatgtgggagagagcaca 513
||||||||||||| |||| |||| |||||||| ||||| ||||||
Sbjct: 244 gctgtgatgcactgttgctgctgttgcttatgttggagaaagcaca 289
>gb|AU238753.1|AU238753 AU238753 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-09-L10 5',
mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 302 atttgatgctgtgattcactttgc 325
>gb|AV553148.1|AV553148 AV553148 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ55b05R 5', mRNA sequence
Length = 568
Score = 40.1 bits (20), Expect = 0.37
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 436 gtcaacaagatatttgctgaaaatgcatttgatgctgtgatgca 479
|||||||||||||| | || ||||| ||||| |||||||||||
Sbjct: 64 gtcaacaagatattcacagagaatgcctttgacgctgtgatgca 107
>gb|BP829522.1|BP829522 BP829522 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-82-F13 5',
mRNA sequence
Length = 384
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 299 atttgatgctgtgattcactttgc 322
>gb|BP840085.1|BP840085 BP840085 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-29-B17 5',
mRNA sequence
Length = 388
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 267 atttgatgctgtgattcactttgc 290
>gb|AY094481.1| Arabidopsis thaliana At1g63180/F16M19_8 mRNA sequence
Length = 1240
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 268 atttgatgctgtgattcactttgc 291
>gb|AY133709.1| Arabidopsis thaliana clone C103301 putative UDP-glucose 4-epimerase
protein (At4g20460) mRNA, complete cds
Length = 1171
Score = 40.1 bits (20), Expect = 0.37
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcac 512
||||||||||| ||||| ||||| || | || ||||| |||||||||||
Sbjct: 337 tttgatgctgttatgcattttgctgcagtagcatatgttggagagagcac 386
>emb|AX506164.1| Sequence 859 from Patent WO0216655
Length = 1140
Score = 40.1 bits (20), Expect = 0.37
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcac 512
||||||||||| ||||| ||||| || | || ||||| |||||||||||
Sbjct: 337 tttgatgctgttatgcattttgctgcagtagcatatgttggagagagcac 386
>gb|AY085887.1| Arabidopsis thaliana clone 1932 mRNA, complete sequence
Length = 1397
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 445 atttgatgctgtgattcactttgc 468
>gb|AC010795.5|AC010795 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete
sequence
Length = 100512
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 80149 atttgatgctgtgattcactttgc 80126
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 40.1 bits (20), Expect = 0.37
Identities = 42/50 (84%)
Strand = Plus / Minus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcac 512
||||||||||| ||||| ||||| || | || ||||| |||||||||||
Sbjct: 6943683 tttgatgctgttatgcattttgctgcagtagcatatgttggagagagcac 6943634
>dbj|AB017065.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC16
Length = 61290
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 165 gctggttatattggttcacatgccgctttaag 196
||||||||||| || |||||||| ||||||||
Sbjct: 35358 gctggttatatcgggtcacatgcggctttaag 35389
>dbj|AK117913.1| Arabidopsis thaliana At1g63180 mRNA for putative uridine
diphosphate glucose epimerase, complete cds, clone:
RAFL19-09-L10
Length = 1263
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 300 atttgatgctgtgattcactttgc 323
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 165 gctggttatattggttcacatgccgctttaag 196
||||||||||| || |||||||| ||||||||
Sbjct: 16284634 gctggttatatcgggtcacatgcggctttaag 16284665
>emb|AL080253.2|ATF9F13 Arabidopsis thaliana DNA chromosome 4, BAC clone F9F13 (ESSA project)
Length = 109936
Score = 40.1 bits (20), Expect = 0.37
Identities = 42/50 (84%)
Strand = Plus / Minus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcac 512
||||||||||| ||||| ||||| || | || ||||| |||||||||||
Sbjct: 49521 tttgatgctgttatgcattttgctgcagtagcatatgttggagagagcac 49472
>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53
Length = 197568
Score = 40.1 bits (20), Expect = 0.37
Identities = 42/50 (84%)
Strand = Plus / Minus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcac 512
||||||||||| ||||| ||||| || | || ||||| |||||||||||
Sbjct: 35068 tttgatgctgttatgcattttgctgcagtagcatatgttggagagagcac 35019
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 7670238 atttgatgctgtgattcactttgc 7670215
>ref|NM_123815.1| Arabidopsis thaliana DUR (DEFECTIVE UGE IN ROOT); NAD binding /
UDP-glucose 4-epimerase/ catalytic AT5G44480 (DUR) mRNA,
complete cds
Length = 1311
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 165 gctggttatattggttcacatgccgctttaag 196
||||||||||| || |||||||| ||||||||
Sbjct: 307 gctggttatatcgggtcacatgcggctttaag 338
>ref|NM_118165.2| Arabidopsis thaliana NAD binding / UDP-glucose 4-epimerase/
catalytic AT4G20460 mRNA, complete cds
Length = 1171
Score = 40.1 bits (20), Expect = 0.37
Identities = 42/50 (84%)
Strand = Plus / Plus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcac 512
||||||||||| ||||| ||||| || | || ||||| |||||||||||
Sbjct: 337 tttgatgctgttatgcattttgctgcagtagcatatgttggagagagcac 386
>ref|NM_104996.3| Arabidopsis thaliana NAD binding / UDP-glucose 4-epimerase/
catalytic AT1G63180 mRNA, complete cds
Length = 1393
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 atttgatgctgtgatgcactttgc 485
||||||||||||||| ||||||||
Sbjct: 438 atttgatgctgtgattcactttgc 461
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 40.1 bits (20), Expect = 0.37
Identities = 42/50 (84%)
Strand = Plus / Minus
Query: 463 tttgatgctgtgatgcactttgcagctgnngcttatgtgggagagagcac 512
||||||||||| ||||| ||||| || | || ||||| |||||||||||
Sbjct: 11030934 tttgatgctgttatgcattttgctgcagtagcatatgttggagagagcac 11030885
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 165 gctggttatattggttcacatgccgctttaag 196
||||||||||| || |||||||| ||||||||
Sbjct: 17939140 gctggttatatcgggtcacatgcggctttaag 17939171
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 244,310
Number of Sequences: 1013581
Number of extensions: 244310
Number of successful extensions: 16951
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16051
Number of HSP's gapped (non-prelim): 891
length of query: 523
length of database: 908,940,872
effective HSP length: 20
effective length of query: 503
effective length of database: 888,669,252
effective search space: 447000633756
effective search space used: 447000633756
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)